Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GYO entry

There are 5 chains in PDB entry 9GYO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LEU 373
B	SER 2	ASN 340
G	ASN 5	ARG 62
N	GLN 1	SER 127
R	LEU 20	ARG 292

There are 30 helices in PDB entry 9GYO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	212	218	Right-handed 310
Helix 4	AA4	A	244	258	Right-handed alpha
Helix 5	AA5	A	272	283	Right-handed alpha
Helix 6	AA6	A	291	297	Right-handed 310
Helix 7	AA7	A	310	331	Right-handed alpha
Helix 8	AA8	A	349	370	Right-handed alpha
Helix 9	AA9	B	3	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	G	6	24	Right-handed alpha
Helix 12	AB3	G	29	44	Right-handed alpha
Helix 13	AB4	G	55	59	Right-handed 310
Helix 14	AB5	N	28	32	Right-handed 310
Helix 15	AB6	N	87	91	Right-handed 310
Helix 16	AB7	R	21	42	Right-handed alpha
Helix 17	AB8	R	48	68	Right-handed alpha
Helix 18	AB9	R	70	75	Right-handed alpha
Helix 19	AC1	R	81	116	Right-handed alpha
Helix 20	AC2	R	123	140	Right-handed alpha
Helix 21	AC3	R	141	144	Right-handed 310
Helix 22	AC4	R	156	161	Right-handed alpha
Helix 23	AC5	R	162	173	Right-handed alpha
Helix 24	AC6	R	173	207	Right-handed alpha
Helix 25	AC7	R	212	235	Right-handed alpha
Helix 26	AC8	R	236	252	Right-handed alpha
Helix 27	AC9	R	260	275	Right-handed alpha
Helix 28	AD1	R	275	284	Right-handed alpha
Helix 29	AD2	R	284	289	Right-handed alpha
Helix 30	AD3	R	290	292	Right-handed 310

There are 10 sheets in PDB entry 9GYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	222	228	parallel
Strand 5	A	265	271	parallel
Strand 6	A	338	342	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GYO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYO