Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GYR entry

There are 8 chains in PDB entry 9GYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -3PRO 36
A
 SER 38ALA 97
B
 GLY -4PRO 36
B
 SER 38LEU 95
C
 SER -3PRO 36
C
 SER 38ALA 97
D
 LEU -5PRO 36
D
 SER 38THR 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 9GYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 31Right-handed alpha
Helix 2
AA2
A
65 71Right-handed alpha
Helix 3
AA3
A
91 95Right-handed 310
Helix 4
AA4
B
23 31Right-handed alpha
Helix 5
AA5
B
65 71Right-handed alpha
Helix 6
AA6
B
77 79Right-handed 310
Helix 7
AA7
C
23 31Right-handed alpha
Helix 8
AA8
C
65 71Right-handed alpha
Helix 9
AA9
C
91 95Right-handed 310
Helix 10
AB1
D
23 31Right-handed alpha
Helix 11
AB2
D
65 71Right-handed alpha
Helix 12
AB3
D
77 79Right-handed 310
Helix 13
AB4
D
91 96Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9GYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
85 88parallel
Strand 4
A
48 53anti-parallel
Strand 5
A
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 19first strand
Strand 2
B
2 9anti-parallel
Strand 3
B
85 88parallel
Strand 4
B
48 53anti-parallel
Strand 5
B
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 19first strand
Strand 2
C
2 9anti-parallel
Strand 3
C
85 88parallel
Strand 4
C
48 53anti-parallel
Strand 5
C
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 19first strand
Strand 2
D
2 9anti-parallel
Strand 3
D
85 88parallel
Strand 4
D
48 53anti-parallel
Strand 5
D
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
80 81anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il