Analysis of interatomic Contacts of Structural Units in PDB entry:
9GYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GYY entry

There are 2 chains in PDB entry 9GYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLN 223
B
 GLY 2GLN 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9GYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
21 26Right-handed 310
Helix 3
AA3
A
36 45Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
65 74Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
183 188Right-handed alpha
Helix 9
AA9
A
202 207Right-handed alpha
Helix 10
AB1
B
3 11Right-handed alpha
Helix 11
AB2
B
21 26Right-handed 310
Helix 12
AB3
B
36 45Right-handed alpha
Helix 13
AB4
B
59 64Right-handed alpha
Helix 14
AB5
B
65 74Right-handed alpha
Helix 15
AB6
B
119 121Right-handed 310
Helix 16
AB7
B
129 131Right-handed 310
Helix 17
AB8
B
184 187Right-handed 310
Helix 18
AB9
B
202 207Right-handed alpha
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There are 12 sheets in PDB entry 9GYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
132 136parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
148 149anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
132 136parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
154 155anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
103 107anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
81 88anti-parallel
Strand 6
A
54 56anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
189 191anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
211 212parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
214 215parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
132 136parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
148 149anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
132 136parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
154 155anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
103 107anti-parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
81 88anti-parallel
Strand 6
B
54 56anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
189 191anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
211 212parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
214 215parallel
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