Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GZ1 entry

There are 6 chains in PDB entry 9GZ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	MET 932
B	ASP 3	MET 932
C	GLU 43	VAL 187
E	PHE 40	VAL 187
D	PHE 18	HIS 161
F	SER 15	THR 160

There are116 helices in PDB entry 9GZ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	16	Right-handed 310
Helix 2	AA2	A	19	29	Right-handed alpha
Helix 3	AA3	A	72	76	Right-handed 310
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	97	111	Right-handed alpha
Helix 6	AA6	A	131	134	Right-handed 310
Helix 7	AA7	A	135	141	Right-handed alpha
Helix 8	AA8	A	153	169	Right-handed alpha
Helix 9	AA9	A	183	202	Right-handed alpha
Helix 10	AB1	A	215	231	Right-handed alpha
Helix 11	AB2	A	270	275	Right-handed 310
Helix 12	AB3	A	283	291	Right-handed alpha
Helix 13	AB4	A	294	301	Right-handed alpha
Helix 14	AB5	A	306	309	Right-handed 310
Helix 15	AB6	A	310	315	Right-handed alpha
Helix 16	AB7	A	324	340	Right-handed alpha
Helix 17	AB8	A	342	360	Right-handed alpha
Helix 18	AB9	A	377	389	Right-handed alpha
Helix 19	AC1	A	391	401	Right-handed alpha
Helix 20	AC2	A	416	444	Right-handed alpha
Helix 21	AC3	A	472	495	Right-handed alpha
Helix 22	AC4	A	495	504	Right-handed alpha
Helix 23	AC5	A	517	526	Right-handed alpha
Helix 24	AC6	A	529	538	Right-handed alpha
Helix 25	AC7	A	544	557	Right-handed alpha
Helix 26	AC8	A	592	599	Right-handed alpha
Helix 27	AC9	A	602	611	Right-handed alpha
Helix 28	AD1	A	614	622	Right-handed alpha
Helix 29	AD2	A	646	663	Right-handed alpha
Helix 30	AD3	A	685	697	Right-handed alpha
Helix 31	AD4	A	697	708	Right-handed alpha
Helix 32	AD5	A	715	723	Right-handed alpha
Helix 33	AD6	A	724	726	Right-handed 310
Helix 34	AD7	A	737	749	Right-handed alpha
Helix 35	AD8	A	752	754	Right-handed 310
Helix 36	AD9	A	766	826	Right-handed alpha
Helix 37	AE1	A	829	840	Right-handed alpha
Helix 38	AE2	A	840	932	Right-handed alpha
Helix 39	AE3	B	3	16	Right-handed 310
Helix 40	AE4	B	19	27	Right-handed alpha
Helix 41	AE5	B	74	76	Right-handed 310
Helix 42	AE6	B	81	85	Right-handed 310
Helix 43	AE7	B	89	93	Right-handed 310
Helix 44	AE8	B	97	110	Right-handed alpha
Helix 45	AE9	B	135	143	Right-handed alpha
Helix 46	AF1	B	153	169	Right-handed alpha
Helix 47	AF2	B	183	202	Right-handed alpha
Helix 48	AF3	B	215	231	Right-handed alpha
Helix 49	AF4	B	269	274	Right-handed 310
Helix 50	AF5	B	283	293	Right-handed alpha
Helix 51	AF6	B	294	301	Right-handed alpha
Helix 52	AF7	B	306	309	Right-handed 310
Helix 53	AF8	B	310	315	Right-handed alpha
Helix 54	AF9	B	324	339	Right-handed alpha
Helix 55	AG1	B	342	360	Right-handed alpha
Helix 56	AG2	B	378	389	Right-handed alpha
Helix 57	AG3	B	391	401	Right-handed alpha
Helix 58	AG4	B	416	444	Right-handed alpha
Helix 59	AG5	B	472	495	Right-handed alpha
Helix 60	AG6	B	495	504	Right-handed alpha
Helix 61	AG7	B	517	526	Right-handed alpha
Helix 62	AG8	B	529	538	Right-handed alpha
Helix 63	AG9	B	544	557	Right-handed alpha
Helix 64	AH1	B	592	599	Right-handed alpha
Helix 65	AH2	B	602	612	Right-handed alpha
Helix 66	AH3	B	614	621	Right-handed alpha
Helix 67	AH4	B	646	664	Right-handed alpha
Helix 68	AH5	B	685	696	Right-handed alpha
Helix 69	AH6	B	697	708	Right-handed alpha
Helix 70	AH7	B	715	723	Right-handed alpha
Helix 71	AH8	B	724	726	Right-handed 310
Helix 72	AH9	B	737	749	Right-handed alpha
Helix 73	AI1	B	752	754	Right-handed 310
Helix 74	AI2	B	768	825	Right-handed alpha
Helix 75	AI3	B	828	836	Right-handed alpha
Helix 76	AI4	B	840	932	Right-handed alpha
Helix 77	AI5	C	44	56	Right-handed alpha
Helix 78	AI6	C	64	75	Right-handed alpha
Helix 79	AI7	C	80	89	Right-handed alpha
Helix 80	AI8	C	92	99	Right-handed alpha
Helix 81	AI9	C	102	117	Right-handed alpha
Helix 82	AJ1	C	121	130	Right-handed alpha
Helix 83	AJ2	C	131	133	Right-handed 310
Helix 84	AJ3	C	142	152	Right-handed alpha
Helix 85	AJ4	C	157	166	Right-handed alpha
Helix 86	AJ5	C	177	186	Right-handed alpha
Helix 87	AJ6	E	41	56	Right-handed alpha
Helix 88	AJ7	E	67	76	Right-handed alpha
Helix 89	AJ8	E	80	89	Right-handed alpha
Helix 90	AJ9	E	92	99	Right-handed alpha
Helix 91	AK1	E	102	115	Right-handed alpha
Helix 92	AK2	E	121	133	Right-handed alpha
Helix 93	AK3	E	142	152	Right-handed alpha
Helix 94	AK4	E	157	166	Right-handed alpha
Helix 95	AK5	E	177	187	Right-handed alpha
Helix 96	AK6	D	22	37	Right-handed alpha
Helix 97	AK7	D	45	57	Right-handed alpha
Helix 98	AK8	D	58	63	Right-handed 310
Helix 99	AK9	D	64	73	Right-handed alpha
Helix 100	AL1	D	78	90	Right-handed alpha
Helix 101	AL2	D	95	107	Right-handed alpha
Helix 102	AL3	D	115	127	Right-handed alpha
Helix 103	AL4	D	131	140	Right-handed alpha
Helix 104	AL5	D	143	148	Right-handed alpha
Helix 105	AL6	D	151	160	Right-handed alpha
Helix 106	AL7	F	16	23	Right-handed alpha
Helix 107	AL8	F	26	29	Right-handed 310
Helix 108	AL9	F	30	35	Right-handed alpha
Helix 109	AM1	F	48	57	Right-handed alpha
Helix 110	AM2	F	63	73	Right-handed alpha
Helix 111	AM3	F	79	90	Right-handed alpha
Helix 112	AM4	F	91	94	Right-handed 310
Helix 113	AM5	F	95	107	Right-handed alpha
Helix 114	AM6	F	115	127	Right-handed alpha
Helix 115	AM7	F	131	142	Right-handed alpha
Helix 116	AM8	F	151	160	Right-handed alpha

There are 16 sheets in PDB entry 9GZ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	59	63	anti-parallel
Strand 3	A	46	54	anti-parallel
Strand 4	A	36	40	anti-parallel
Strand 5	A	77	78	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	178	parallel
Strand 5	A	455	460	parallel
Strand 6	A	244	252	anti-parallel
Strand 7	A	258	268	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	409	412	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	576	579	anti-parallel
Strand 3	A	586	589	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	756	758	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	46	55	anti-parallel
Strand 4	B	36	40	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	177	parallel
Strand 5	B	455	461	parallel
Strand 6	B	246	252	anti-parallel
Strand 7	B	258	265	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	241	242	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	373	375	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	406	first strand
Strand 2	B	409	412	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	576	581	anti-parallel
Strand 3	B	584	589	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	714	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	756	758	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	174	176	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	141	first strand
Strand 2	E	174	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GZ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZ1