Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GZM entry

There are 6 chains in PDB entry 9GZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 122SER 1230
N
 T 3 T 52
T
 A 0 A 49
B
 PHE 71ARG 396
R
 A 102 A 102
C
 SER 43LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9GZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 146Right-handed alpha
Helix 2
AA2
A
168 180Right-handed alpha
Helix 3
AA3
A
186 198Right-handed alpha
Helix 4
AA4
A
220 237Right-handed alpha
Helix 5
AA5
A
238 252Right-handed alpha
Helix 6
AA6
A
252 259Right-handed alpha
Helix 7
AA7
A
260 274Right-handed alpha
Helix 8
AA8
A
277 290Right-handed alpha
Helix 9
AA9
A
295 309Right-handed alpha
Helix 10
AB1
A
312 326Right-handed alpha
Helix 11
AB2
A
329 334Right-handed alpha
Helix 12
AB3
A
340 355Right-handed alpha
Helix 13
AB4
A
374 379Right-handed alpha
Helix 14
AB5
A
392 410Right-handed alpha
Helix 15
AB6
A
424 461Right-handed alpha
Helix 16
AB7
A
467 472Right-handed alpha
Helix 17
AB8
A
475 489Right-handed alpha
Helix 18
AB9
A
497 521Right-handed alpha
Helix 19
AC1
A
521 534Right-handed alpha
Helix 20
AC2
A
548 557Right-handed alpha
Helix 21
AC3
A
568 587Right-handed alpha
Helix 22
AC4
A
624 635Right-handed alpha
Helix 23
AC5
A
644 646Right-handed 310
Helix 24
AC6
A
678 687Right-handed alpha
Helix 25
AC7
A
692 704Right-handed alpha
Helix 26
AC8
A
710 723Right-handed alpha
Helix 27
AC9
A
726 730Right-handed 310
Helix 28
AD1
A
756 789Right-handed alpha
Helix 29
AD2
A
818 824Right-handed alpha
Helix 30
AD3
A
836 850Right-handed alpha
Helix 31
AD4
A
856 867Right-handed alpha
Helix 32
AD5
A
867 877Right-handed alpha
Helix 33
AD6
A
884 888Right-handed 310
Helix 34
AD7
A
890 907Right-handed alpha
Helix 35
AD8
A
909 912Right-handed 310
Helix 36
AD9
A
925 936Right-handed alpha
Helix 37
AE1
A
937 944Right-handed alpha
Helix 38
AE2
A
954 973Right-handed alpha
Helix 39
AE3
A
975 981Right-handed alpha
Helix 40
AE4
A
986 997Right-handed alpha
Helix 41
AE5
A
1002 1018Right-handed alpha
Helix 42
AE6
A
1021 1023Right-handed 310
Helix 43
AE7
A
1024 1040Right-handed alpha
Helix 44
AE8
A
1045 1064Right-handed alpha
Helix 45
AE9
A
1111 1141Right-handed alpha
Helix 46
AF1
A
1159 1177Right-handed alpha
Helix 47
AF2
A
1178 1191Right-handed alpha
Helix 48
AF3
A
1197 1210Right-handed alpha
Helix 49
AF4
A
1218 1225Right-handed 310
Helix 50
AF5
B
77 89Right-handed alpha
Helix 51
AF6
B
107 117Right-handed alpha
Helix 52
AF7
B
129 137Right-handed alpha
Helix 53
AF8
B
150 154Right-handed 310
Helix 54
AF9
B
168 177Right-handed alpha
Helix 55
AG1
B
199 214Right-handed alpha
Helix 56
AG2
B
215 220Right-handed 310
Helix 57
AG3
B
230 238Right-handed alpha
Helix 58
AG4
B
248 257Right-handed alpha
Helix 59
AG5
B
267 271Right-handed 310
Helix 60
AG6
B
282 292Right-handed alpha
Helix 61
AG7
B
316 328Right-handed alpha
Helix 62
AG8
B
335 343Right-handed alpha
Helix 63
AG9
B
346 354Right-handed alpha
Helix 64
AH1
B
366 379Right-handed alpha
Helix 65
AH2
C
44 49Right-handed alpha
Helix 66
AH3
C
55 64Right-handed alpha
Helix 67
AH4
C
64 72Right-handed alpha
Helix 68
AH5
C
76 91Right-handed alpha
Helix 69
AH6
C
92 121Right-handed alpha
Helix 70
AH7
C
122 152Right-handed alpha
Helix 71
AH8
C
160 170Right-handed alpha
Helix 72
AH9
C
180 189Right-handed alpha
Helix 73
AI1
C
193 226Right-handed alpha
Helix 74
AI2
C
227 231Right-handed 310
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There are 12 sheets in PDB entry 9GZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
638 642anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
616 623anti-parallel
Strand 3
A
606 613anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
602 604anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 657first strand
Strand 2
A
660 662anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
825 827anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
914 915anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
919 922first strand
Strand 2
A
1152 1155anti-parallel
Strand 3
A
1147 1149anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1077 1079anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1089 1091first strand
Strand 2
A
1098 1100anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
272 274anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
120 124parallel
Strand 3
B
99 102parallel
Strand 4
B
190 194parallel
Strand 5
B
224 229parallel
Strand 6
B
296 303anti-parallel
Strand 7
B
258 266anti-parallel
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