Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GZN entry

There are 5 chains in PDB entry 9GZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 217SER 1230
N
 A 24 A 48
T
 T 4 T 28
B
 PHE 71ARG 396
R
 A 102 A 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9GZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
220 237Right-handed alpha
Helix 2
AA2
A
238 252Right-handed alpha
Helix 3
AA3
A
252 257Right-handed alpha
Helix 4
AA4
A
260 275Right-handed alpha
Helix 5
AA5
A
276 291Right-handed alpha
Helix 6
AA6
A
295 309Right-handed alpha
Helix 7
AA7
A
312 327Right-handed alpha
Helix 8
AA8
A
329 335Right-handed alpha
Helix 9
AA9
A
340 352Right-handed alpha
Helix 10
AB1
A
392 410Right-handed alpha
Helix 11
AB2
A
424 461Right-handed alpha
Helix 12
AB3
A
467 472Right-handed alpha
Helix 13
AB4
A
475 489Right-handed alpha
Helix 14
AB5
A
497 521Right-handed alpha
Helix 15
AB6
A
521 534Right-handed alpha
Helix 16
AB7
A
548 556Right-handed alpha
Helix 17
AB8
A
568 587Right-handed alpha
Helix 18
AB9
A
624 635Right-handed alpha
Helix 19
AC1
A
678 686Right-handed alpha
Helix 20
AC2
A
688 691Right-handed 310
Helix 21
AC3
A
692 704Right-handed alpha
Helix 22
AC4
A
711 724Right-handed alpha
Helix 23
AC5
A
756 789Right-handed alpha
Helix 24
AC6
A
818 824Right-handed alpha
Helix 25
AC7
A
837 850Right-handed alpha
Helix 26
AC8
A
856 867Right-handed alpha
Helix 27
AC9
A
867 877Right-handed alpha
Helix 28
AD1
A
884 888Right-handed 310
Helix 29
AD2
A
893 907Right-handed alpha
Helix 30
AD3
A
909 912Right-handed 310
Helix 31
AD4
A
925 936Right-handed alpha
Helix 32
AD5
A
937 944Right-handed alpha
Helix 33
AD6
A
954 974Right-handed alpha
Helix 34
AD7
A
975 981Right-handed alpha
Helix 35
AD8
A
986 998Right-handed alpha
Helix 36
AD9
A
1002 1015Right-handed alpha
Helix 37
AE1
A
1021 1023Right-handed 310
Helix 38
AE2
A
1024 1039Right-handed alpha
Helix 39
AE3
A
1045 1064Right-handed alpha
Helix 40
AE4
A
1111 1142Right-handed alpha
Helix 41
AE5
A
1159 1177Right-handed alpha
Helix 42
AE6
A
1178 1193Right-handed alpha
Helix 43
AE7
A
1197 1209Right-handed alpha
Helix 44
AE8
A
1218 1224Right-handed 310
Helix 45
AE9
B
77 89Right-handed alpha
Helix 46
AF1
B
107 117Right-handed alpha
Helix 47
AF2
B
128 137Right-handed alpha
Helix 48
AF3
B
150 154Right-handed 310
Helix 49
AF4
B
168 176Right-handed alpha
Helix 50
AF5
B
199 213Right-handed alpha
Helix 51
AF6
B
216 221Right-handed alpha
Helix 52
AF7
B
230 238Right-handed alpha
Helix 53
AF8
B
248 258Right-handed alpha
Helix 54
AF9
B
267 269Right-handed 310
Helix 55
AG1
B
281 292Right-handed alpha
Helix 56
AG2
B
316 328Right-handed alpha
Helix 57
AG3
B
334 343Right-handed alpha
Helix 58
AG4
B
346 355Right-handed alpha
Helix 59
AG5
B
366 379Right-handed alpha
Helix 60
AG6
B
390 394Right-handed 310
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There are 11 sheets in PDB entry 9GZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
638 642anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
616 623anti-parallel
Strand 3
A
606 613anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
602 604anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
825 827anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
914 915anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1077 1079anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1091first strand
Strand 2
A
1098 1099anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1147 1149first strand
Strand 2
A
1152 1154anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
271 274anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
120 124parallel
Strand 3
B
99 102parallel
Strand 4
B
190 194parallel
Strand 5
B
224 229parallel
Strand 6
B
296 301anti-parallel
Strand 7
B
261 266anti-parallel
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