Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GZO entry

There are 5 chains in PDB entry 9GZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 218SER 1230
N
 T 20 T 50
T
 A 1 A 31
B
 PHE 71GLU 394
R
 G 2 A 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9GZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
220 237Right-handed alpha
Helix 2
AA2
A
238 252Right-handed alpha
Helix 3
AA3
A
252 257Right-handed alpha
Helix 4
AA4
A
260 273Right-handed alpha
Helix 5
AA5
A
276 291Right-handed alpha
Helix 6
AA6
A
295 310Right-handed alpha
Helix 7
AA7
A
312 323Right-handed alpha
Helix 8
AA8
A
329 337Right-handed alpha
Helix 9
AA9
A
340 355Right-handed alpha
Helix 10
AB1
A
374 379Right-handed alpha
Helix 11
AB2
A
392 410Right-handed alpha
Helix 12
AB3
A
424 461Right-handed alpha
Helix 13
AB4
A
467 473Right-handed alpha
Helix 14
AB5
A
475 489Right-handed alpha
Helix 15
AB6
A
496 521Right-handed alpha
Helix 16
AB7
A
521 538Right-handed alpha
Helix 17
AB8
A
548 556Right-handed alpha
Helix 18
AB9
A
568 587Right-handed alpha
Helix 19
AC1
A
624 635Right-handed alpha
Helix 20
AC2
A
678 687Right-handed alpha
Helix 21
AC3
A
692 705Right-handed alpha
Helix 22
AC4
A
710 724Right-handed alpha
Helix 23
AC5
A
763 789Right-handed alpha
Helix 24
AC6
A
818 824Right-handed alpha
Helix 25
AC7
A
836 850Right-handed alpha
Helix 26
AC8
A
856 867Right-handed alpha
Helix 27
AC9
A
867 877Right-handed alpha
Helix 28
AD1
A
883 888Right-handed 310
Helix 29
AD2
A
890 906Right-handed alpha
Helix 30
AD3
A
909 912Right-handed 310
Helix 31
AD4
A
925 936Right-handed alpha
Helix 32
AD5
A
937 944Right-handed alpha
Helix 33
AD6
A
954 972Right-handed alpha
Helix 34
AD7
A
975 981Right-handed alpha
Helix 35
AD8
A
986 996Right-handed alpha
Helix 36
AD9
A
1002 1017Right-handed alpha
Helix 37
AE1
A
1021 1023Right-handed 310
Helix 38
AE2
A
1024 1044Right-handed alpha
Helix 39
AE3
A
1045 1065Right-handed alpha
Helix 40
AE4
A
1111 1117Right-handed alpha
Helix 41
AE5
A
1118 1141Right-handed alpha
Helix 42
AE6
A
1159 1175Right-handed alpha
Helix 43
AE7
A
1178 1192Right-handed alpha
Helix 44
AE8
A
1201 1210Right-handed alpha
Helix 45
AE9
A
1218 1223Right-handed 310
Helix 46
AF1
B
77 90Right-handed alpha
Helix 47
AF2
B
107 116Right-handed alpha
Helix 48
AF3
B
129 140Right-handed alpha
Helix 49
AF4
B
168 177Right-handed alpha
Helix 50
AF5
B
199 214Right-handed alpha
Helix 51
AF6
B
215 220Right-handed 310
Helix 52
AF7
B
230 238Right-handed alpha
Helix 53
AF8
B
248 256Right-handed alpha
Helix 54
AF9
B
288 294Right-handed alpha
Helix 55
AG1
B
316 328Right-handed alpha
Helix 56
AG2
B
334 343Right-handed alpha
Helix 57
AG3
B
346 354Right-handed alpha
Helix 58
AG4
B
366 379Right-handed alpha
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There are 12 sheets in PDB entry 9GZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
638 642anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
602 603anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 613first strand
Strand 2
A
616 623anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 795first strand
Strand 2
A
706 709anti-parallel
Strand 3
A
825 826anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
914 915anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
918 921first strand
Strand 2
A
1152 1156anti-parallel
Strand 3
A
1147 1149anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1077 1079anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1089 1091first strand
Strand 2
A
1098 1100anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
271 274anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
190 194parallel
Strand 3
B
224 229parallel
Strand 4
B
295 300anti-parallel
Strand 5
B
261 267anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
147 148parallel
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