Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GZQ entry

There are 2 chains in PDB entry 9GZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LYS 978
B
 ALA 2ALA 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9GZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
77 93Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
109 118Right-handed alpha
Helix 5
AA5
A
152 161Right-handed alpha
Helix 6
AA6
A
195 200Right-handed alpha
Helix 7
AA7
A
217 221Right-handed 310
Helix 8
AA8
A
222 237Right-handed alpha
Helix 9
AA9
A
239 258Right-handed alpha
Helix 10
AB1
A
300 306Right-handed alpha
Helix 11
AB2
A
331 348Right-handed alpha
Helix 12
AB3
A
351 353Right-handed 310
Helix 13
AB4
A
364 378Right-handed alpha
Helix 14
AB5
A
386 390Right-handed 310
Helix 15
AB6
A
392 401Right-handed alpha
Helix 16
AB7
A
411 418Right-handed alpha
Helix 17
AB8
A
427 431Right-handed 310
Helix 18
AB9
A
432 446Right-handed alpha
Helix 19
AC1
A
458 463Right-handed alpha
Helix 20
AC2
A
474 489Right-handed alpha
Helix 21
AC3
A
493 500Right-handed alpha
Helix 22
AC4
A
503 511Right-handed alpha
Helix 23
AC5
A
515 524Right-handed alpha
Helix 24
AC6
A
526 540Right-handed alpha
Helix 25
AC7
A
548 553Right-handed alpha
Helix 26
AC8
A
556 571Right-handed alpha
Helix 27
AC9
A
589 596Right-handed alpha
Helix 28
AD1
A
603 607Right-handed 310
Helix 29
AD2
A
611 623Right-handed alpha
Helix 30
AD3
A
636 643Right-handed alpha
Helix 31
AD4
A
655 660Right-handed alpha
Helix 32
AD5
A
662 671Right-handed alpha
Helix 33
AD6
A
684 689Right-handed alpha
Helix 34
AD7
A
698 702Right-handed 310
Helix 35
AD8
A
728 741Right-handed alpha
Helix 36
AD9
A
748 760Right-handed alpha
Helix 37
AE1
A
844 849Right-handed alpha
Helix 38
AE2
A
859 864Right-handed alpha
Helix 39
AE3
A
907 912Right-handed alpha
Helix 40
AE4
A
960 967Right-handed alpha
Helix 41
AE5
A
972 978Right-handed alpha
Helix 42
AE6
B
14 33Right-handed alpha
Helix 43
AE7
B
33 50Right-handed alpha
Helix 44
AE8
B
51 62Right-handed alpha
Helix 45
AE9
B
62 75Right-handed alpha
Helix 46
AF1
B
76 96Right-handed alpha
Helix 47
AF2
B
97 110Right-handed alpha
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There are 10 sheets in PDB entry 9GZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
6 9anti-parallel
Strand 3
A
72 73parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
58 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
206 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
178 180anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 264first strand
Strand 2
A
273 279anti-parallel
Strand 3
A
282 287anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
692 693anti-parallel
Strand 4
A
675 679parallel
Strand 5
A
648 652parallel
Strand 6
A
355 358parallel
Strand 7
A
384 385parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
449 453parallel
Strand 3
A
420 424parallel
Strand 4
A
543 547parallel
Strand 5
A
580 583parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
803 804parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 707first strand
Strand 2
A
712 715anti-parallel
Strand 3
A
777 778anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 827first strand
Strand 2
A
895 899parallel
Strand 3
A
854 856anti-parallel
Strand 4
A
879 887parallel
Strand 5
A
870 876anti-parallel
Strand 6
A
929 934anti-parallel
Strand 7
A
822 827anti-parallel
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