Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GZR entry

There are 12 chains in PDB entry 9GZR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 56	GLU 268
B	GLU 54	GLU 268
C	LYS 56	GLU 268
D	GLU 54	GLU 268
E	LYS 56	GLU 268
F	GLU 54	GLU 268
G	LYS 56	GLU 268
H	GLU 54	GLU 268
I	LYS 56	GLU 268
J	GLU 54	GLU 268
K	LYS 56	GLU 268
L	GLU 54	GLU 268

There are 92 helices in PDB entry 9GZR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	95	Right-handed 310
Helix 2	AA2	A	120	124	Right-handed 310
Helix 3	AA3	A	141	145	Right-handed 310
Helix 4	AA4	A	216	227	Right-handed alpha
Helix 5	AA5	A	235	238	Right-handed 310
Helix 6	AA6	A	239	245	Right-handed alpha
Helix 7	AA7	A	263	267	Right-handed alpha
Helix 8	AA8	B	91	95	Right-handed 310
Helix 9	AA9	B	111	116	Right-handed 310
Helix 10	AB1	B	141	145	Right-handed 310
Helix 11	AB2	B	216	227	Right-handed alpha
Helix 12	AB3	B	235	238	Right-handed 310
Helix 13	AB4	B	239	245	Right-handed alpha
Helix 14	AB5	B	263	267	Right-handed alpha
Helix 15	AB6	C	91	96	Right-handed 310
Helix 16	AB7	C	120	124	Right-handed 310
Helix 17	AB8	C	141	145	Right-handed 310
Helix 18	AB9	C	216	227	Right-handed alpha
Helix 19	AC1	C	235	238	Right-handed 310
Helix 20	AC2	C	239	245	Right-handed alpha
Helix 21	AC3	C	263	268	Right-handed alpha
Helix 22	AC4	D	72	74	Right-handed 310
Helix 23	AC5	D	91	96	Right-handed 310
Helix 24	AC6	D	112	116	Right-handed 310
Helix 25	AC7	D	141	145	Right-handed 310
Helix 26	AC8	D	216	227	Right-handed alpha
Helix 27	AC9	D	235	238	Right-handed 310
Helix 28	AD1	D	239	245	Right-handed alpha
Helix 29	AD2	D	263	267	Right-handed alpha
Helix 30	AD3	E	72	74	Right-handed 310
Helix 31	AD4	E	91	95	Right-handed 310
Helix 32	AD5	E	120	124	Right-handed 310
Helix 33	AD6	E	141	145	Right-handed 310
Helix 34	AD7	E	216	227	Right-handed alpha
Helix 35	AD8	E	239	245	Right-handed alpha
Helix 36	AD9	E	263	268	Right-handed alpha
Helix 37	AE1	F	91	96	Right-handed 310
Helix 38	AE2	F	111	116	Right-handed 310
Helix 39	AE3	F	121	125	Right-handed 310
Helix 40	AE4	F	141	145	Right-handed 310
Helix 41	AE5	F	216	227	Right-handed alpha
Helix 42	AE6	F	235	238	Right-handed 310
Helix 43	AE7	F	239	245	Right-handed alpha
Helix 44	AE8	F	263	267	Right-handed alpha
Helix 45	AE9	G	72	74	Right-handed 310
Helix 46	AF1	G	91	95	Right-handed 310
Helix 47	AF2	G	120	124	Right-handed 310
Helix 48	AF3	G	141	145	Right-handed 310
Helix 49	AF4	G	161	165	Right-handed 310
Helix 50	AF5	G	216	227	Right-handed alpha
Helix 51	AF6	G	235	238	Right-handed 310
Helix 52	AF7	G	239	245	Right-handed alpha
Helix 53	AF8	G	263	268	Right-handed alpha
Helix 54	AF9	H	72	74	Right-handed 310
Helix 55	AG1	H	91	95	Right-handed 310
Helix 56	AG2	H	111	116	Right-handed 310
Helix 57	AG3	H	121	125	Right-handed 310
Helix 58	AG4	H	141	145	Right-handed 310
Helix 59	AG5	H	216	227	Right-handed alpha
Helix 60	AG6	H	235	238	Right-handed 310
Helix 61	AG7	H	239	245	Right-handed alpha
Helix 62	AG8	H	263	267	Right-handed alpha
Helix 63	AG9	I	91	95	Right-handed 310
Helix 64	AH1	I	120	124	Right-handed 310
Helix 65	AH2	I	141	145	Right-handed 310
Helix 66	AH3	I	216	227	Right-handed alpha
Helix 67	AH4	I	235	238	Right-handed 310
Helix 68	AH5	I	239	246	Right-handed alpha
Helix 69	AH6	I	263	268	Right-handed alpha
Helix 70	AH7	J	91	95	Right-handed 310
Helix 71	AH8	J	112	116	Right-handed 310
Helix 72	AH9	J	141	145	Right-handed 310
Helix 73	AI1	J	216	227	Right-handed alpha
Helix 74	AI2	J	235	238	Right-handed 310
Helix 75	AI3	J	239	245	Right-handed alpha
Helix 76	AI4	J	263	267	Right-handed alpha
Helix 77	AI5	K	72	76	Right-handed 310
Helix 78	AI6	K	91	95	Right-handed 310
Helix 79	AI7	K	120	125	Right-handed 310
Helix 80	AI8	K	141	145	Right-handed 310
Helix 81	AI9	K	161	165	Right-handed 310
Helix 82	AJ1	K	216	227	Right-handed alpha
Helix 83	AJ2	K	235	238	Right-handed 310
Helix 84	AJ3	K	239	245	Right-handed alpha
Helix 85	AJ4	K	263	268	Right-handed alpha
Helix 86	AJ5	L	91	96	Right-handed 310
Helix 87	AJ6	L	112	116	Right-handed 310
Helix 88	AJ7	L	141	145	Right-handed 310
Helix 89	AJ8	L	216	227	Right-handed alpha
Helix 90	AJ9	L	235	238	Right-handed 310
Helix 91	AK1	L	239	245	Right-handed alpha
Helix 92	AK2	L	263	267	Right-handed alpha

There are 48 sheets in PDB entry 9GZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	76	80	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	99	100	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	135	first strand
Strand 2	A	207	213	anti-parallel
Strand 3	A	166	182	anti-parallel
Strand 4	A	151	161	anti-parallel
Strand 5	A	228	233	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	166	182	anti-parallel
Strand 3	A	261	262	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	76	81	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	99	100	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	135	first strand
Strand 2	B	207	213	anti-parallel
Strand 3	B	167	182	anti-parallel
Strand 4	B	151	160	anti-parallel
Strand 5	B	228	233	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	167	182	anti-parallel
Strand 3	B	261	262	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	76	80	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	99	100	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	207	213	anti-parallel
Strand 3	C	168	182	anti-parallel
Strand 4	C	151	159	anti-parallel
Strand 5	C	228	233	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	168	182	anti-parallel
Strand 3	C	261	262	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	76	81	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	99	100	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	135	first strand
Strand 2	D	207	213	anti-parallel
Strand 3	D	167	182	anti-parallel
Strand 4	D	151	160	anti-parallel
Strand 5	D	228	233	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	167	182	anti-parallel
Strand 3	D	261	262	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	61	first strand
Strand 2	E	76	80	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	70	first strand
Strand 2	E	99	100	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	135	first strand
Strand 2	E	207	213	anti-parallel
Strand 3	E	167	182	anti-parallel
Strand 4	E	151	160	anti-parallel
Strand 5	E	228	233	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	186	first strand
Strand 2	E	167	182	anti-parallel
Strand 3	E	261	262	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	61	first strand
Strand 2	F	76	81	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	70	first strand
Strand 2	F	99	100	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	135	first strand
Strand 2	F	207	213	anti-parallel
Strand 3	F	166	182	anti-parallel
Strand 4	F	151	161	anti-parallel
Strand 5	F	228	233	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	186	first strand
Strand 2	F	166	182	anti-parallel
Strand 3	F	261	262	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	61	first strand
Strand 2	G	76	80	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	70	first strand
Strand 2	G	99	100	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	135	first strand
Strand 2	G	207	213	anti-parallel
Strand 3	G	167	182	anti-parallel
Strand 4	G	151	160	anti-parallel
Strand 5	G	228	233	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	186	first strand
Strand 2	G	167	182	anti-parallel
Strand 3	G	261	262	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	61	first strand
Strand 2	H	76	81	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	70	first strand
Strand 2	H	99	100	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	208	213	anti-parallel
Strand 3	H	167	182	anti-parallel
Strand 4	H	151	160	anti-parallel
Strand 5	H	228	233	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	186	first strand
Strand 2	H	167	182	anti-parallel
Strand 3	H	261	262	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	61	first strand
Strand 2	I	76	80	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	70	first strand
Strand 2	I	99	100	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	135	first strand
Strand 2	I	207	213	anti-parallel
Strand 3	I	167	182	anti-parallel
Strand 4	I	151	160	anti-parallel
Strand 5	I	228	233	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	135	first strand
Strand 2	I	207	213	anti-parallel
Strand 3	I	167	182	anti-parallel
Strand 4	I	261	262	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	61	first strand
Strand 2	J	76	81	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	69	70	first strand
Strand 2	J	99	100	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	135	first strand
Strand 2	J	207	213	anti-parallel
Strand 3	J	165	182	anti-parallel
Strand 4	J	151	162	anti-parallel
Strand 5	J	228	233	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	186	first strand
Strand 2	J	165	182	anti-parallel
Strand 3	J	261	262	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	60	first strand
Strand 2	K	77	80	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	99	100	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	135	first strand
Strand 2	K	207	213	anti-parallel
Strand 3	K	167	182	anti-parallel
Strand 4	K	151	160	anti-parallel
Strand 5	K	228	233	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	135	first strand
Strand 2	K	207	213	anti-parallel
Strand 3	K	167	182	anti-parallel
Strand 4	K	261	262	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	56	61	first strand
Strand 2	L	76	81	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	99	100	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	135	first strand
Strand 2	L	207	213	anti-parallel
Strand 3	L	167	182	anti-parallel
Strand 4	L	151	160	anti-parallel
Strand 5	L	228	233	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	185	186	first strand
Strand 2	L	167	182	anti-parallel
Strand 3	L	261	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GZR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GZR