Analysis of interatomic Contacts of Structural Units in PDB entry:
9H01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H01 entry

There are 2 chains in PDB entry 9H01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 25THR 524
B
 ALA 2GLY 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9H01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 59Right-handed alpha
Helix 2
AA2
A
75 82Right-handed alpha
Helix 3
AA3
A
159 175Right-handed alpha
Helix 4
AA4
A
189 195Right-handed alpha
Helix 5
AA5
A
226 230Right-handed 310
Helix 6
AA6
A
245 248Right-handed 310
Helix 7
AA7
A
252 258Right-handed alpha
Helix 8
AA8
A
269 286Right-handed alpha
Helix 9
AA9
A
301 325Right-handed alpha
Helix 10
AB1
A
362 369Right-handed alpha
Helix 11
AB2
A
432 437Right-handed 310
Helix 12
AB3
A
475 480Right-handed alpha
Helix 13
AB4
A
485 505Right-handed alpha
Helix 14
AB5
A
516 521Right-handed alpha
Helix 15
AB6
B
30 34Right-handed 310
Helix 16
AB7
B
89 93Right-handed 310
Helix 17
AB8
B
104 106Right-handed 310
Helix 18
AB9
B
107 112Right-handed alpha
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There are 9 sheets in PDB entry 9H01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
116 120parallel
Strand 3
A
107 111anti-parallel
Strand 4
A
86 93anti-parallel
Strand 5
A
182 185parallel
Strand 6
A
240 243parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
235 237parallel
Strand 3
A
216 218anti-parallel
Strand 4
A
223 225anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
328 332parallel
Strand 3
A
381 385parallel
Strand 4
A
396 401parallel
Strand 5
A
506 511anti-parallel
Strand 6
A
439 441anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
418 421anti-parallel
Strand 3
A
425 428anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
473 474parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
483 484anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
119 123parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
35 41anti-parallel
Strand 5
B
48 53anti-parallel
Strand 6
B
60 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
119 123parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
114 115anti-parallel
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