Analysis of interatomic Contacts of Structural Units in PDB entry:
9H08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H08 entry

There is 1 chain in PDB entry 9H08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9ASN 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9H08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 26Right-handed alpha
Helix 2
AA2
A
28 36Right-handed alpha
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
56 66Right-handed alpha
Helix 5
AA5
A
80 89Right-handed alpha
Helix 6
AA6
A
99 110Right-handed alpha
Helix 7
AA7
A
113 119Right-handed alpha
Helix 8
AA8
A
146 150Right-handed 310
Helix 9
AA9
A
151 153Right-handed 310
Helix 10
AB1
A
154 165Right-handed alpha
Helix 11
AB2
A
192 201Right-handed alpha
Helix 12
AB3
A
226 230Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9H08.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
92 97parallel
Strand 3
A
71 75parallel
Strand 4
A
138 143parallel
Strand 5
A
166 176parallel
Strand 6
A
234 240anti-parallel
Strand 7
A
214 220anti-parallel
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