Analysis of interatomic Contacts of Structural Units in PDB entry:
9H0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H0M entry

There are 9 chains in PDB entry 9H0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ARG 142
B	VAL 2	HIS 147
C	VAL 2	ARG 142
D	VAL 2	HIS 147
E	THR 64	ASP 278
F	THR 64	ASP 278
G	VAL 2	ALA 139
H	VAL 2	TYR 146
I	VAL 2	PHE 15

There are 97 helices in PDB entry 9H0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	18	Right-handed alpha
Helix 2	AA2	A	21	37	Right-handed alpha
Helix 3	AA3	A	38	44	Right-handed 310
Helix 4	AA4	A	53	73	Right-handed alpha
Helix 5	AA5	A	76	81	Right-handed alpha
Helix 6	AA6	A	81	90	Right-handed alpha
Helix 7	AA7	A	96	114	Right-handed alpha
Helix 8	AA8	A	119	138	Right-handed alpha
Helix 9	AA9	B	5	17	Right-handed alpha
Helix 10	AB1	B	20	36	Right-handed alpha
Helix 11	AB2	B	37	47	Right-handed 310
Helix 12	AB3	B	51	58	Right-handed alpha
Helix 13	AB4	B	58	77	Right-handed alpha
Helix 14	AB5	B	78	80	Right-handed 310
Helix 15	AB6	B	81	86	Right-handed alpha
Helix 16	AB7	B	86	96	Right-handed alpha
Helix 17	AB8	B	101	120	Right-handed alpha
Helix 18	AB9	B	121	123	Right-handed 310
Helix 19	AC1	B	124	143	Right-handed alpha
Helix 20	AC2	C	4	15	Right-handed alpha
Helix 21	AC3	C	21	37	Right-handed alpha
Helix 22	AC4	C	38	44	Right-handed 310
Helix 23	AC5	C	53	73	Right-handed alpha
Helix 24	AC6	C	76	81	Right-handed alpha
Helix 25	AC7	C	81	90	Right-handed alpha
Helix 26	AC8	C	96	114	Right-handed alpha
Helix 27	AC9	C	119	138	Right-handed alpha
Helix 28	AD1	D	5	17	Right-handed alpha
Helix 29	AD2	D	20	36	Right-handed alpha
Helix 30	AD3	D	37	47	Right-handed 310
Helix 31	AD4	D	51	57	Right-handed alpha
Helix 32	AD5	D	58	77	Right-handed alpha
Helix 33	AD6	D	78	80	Right-handed 310
Helix 34	AD7	D	81	86	Right-handed alpha
Helix 35	AD8	D	86	96	Right-handed alpha
Helix 36	AD9	D	101	120	Right-handed alpha
Helix 37	AE1	D	121	123	Right-handed 310
Helix 38	AE2	D	124	143	Right-handed alpha
Helix 39	AE3	E	97	108	Right-handed alpha
Helix 40	AE4	E	157	161	Right-handed 310
Helix 41	AE5	E	207	219	Right-handed alpha
Helix 42	AE6	E	252	256	Right-handed 310
Helix 43	AE7	E	267	271	Right-handed 310
Helix 44	AE8	F	97	109	Right-handed alpha
Helix 45	AE9	F	157	161	Right-handed 310
Helix 46	AF1	F	207	218	Right-handed alpha
Helix 47	AF2	F	252	256	Right-handed 310
Helix 48	AF3	F	267	271	Right-handed 310
Helix 49	AF4	G	4	16	Right-handed alpha
Helix 50	AF5	G	17	19	Right-handed 310
Helix 51	AF6	G	21	37	Right-handed alpha
Helix 52	AF7	G	38	44	Right-handed 310
Helix 53	AF8	G	53	73	Right-handed alpha
Helix 54	AF9	G	76	81	Right-handed alpha
Helix 55	AG1	G	81	90	Right-handed alpha
Helix 56	AG2	G	96	114	Right-handed alpha
Helix 57	AG3	G	119	138	Right-handed alpha
Helix 58	AG4	H	5	17	Right-handed alpha
Helix 59	AG5	H	20	36	Right-handed alpha
Helix 60	AG6	H	37	47	Right-handed 310
Helix 61	AG7	H	51	58	Right-handed alpha
Helix 62	AG8	H	58	77	Right-handed alpha
Helix 63	AG9	H	78	80	Right-handed 310
Helix 64	AH1	H	81	86	Right-handed alpha
Helix 65	AH2	H	86	96	Right-handed alpha
Helix 66	AH3	H	101	120	Right-handed alpha
Helix 67	AH4	H	121	123	Right-handed 310
Helix 68	AH5	H	124	142	Right-handed alpha
Helix 69	AH6	I	4	16	Right-handed alpha
Helix 70	AH7	I	21	37	Right-handed alpha
Helix 71	AH8	I	38	44	Right-handed 310
Helix 72	AH9	I	53	73	Right-handed alpha
Helix 73	AI1	I	76	81	Right-handed alpha
Helix 74	AI2	I	81	90	Right-handed alpha
Helix 75	AI3	I	96	114	Right-handed alpha
Helix 76	AI4	I	119	137	Right-handed alpha
Helix 77	AI5	J	5	17	Right-handed alpha
Helix 78	AI6	J	20	36	Right-handed alpha
Helix 79	AI7	J	37	47	Right-handed 310
Helix 80	AI8	J	51	58	Right-handed alpha
Helix 81	AI9	J	58	71	Right-handed alpha
Helix 82	AJ1	J	72	77	Right-handed alpha
Helix 83	AJ2	J	78	80	Right-handed 310
Helix 84	AJ3	J	81	86	Right-handed alpha
Helix 85	AJ4	J	86	95	Right-handed alpha
Helix 86	AJ5	J	101	120	Right-handed alpha
Helix 87	AJ6	J	121	123	Right-handed 310
Helix 88	AJ7	J	124	143	Right-handed alpha
Helix 89	AJ8	K	97	108	Right-handed alpha
Helix 90	AJ9	K	157	161	Right-handed 310
Helix 91	AK1	K	207	219	Right-handed alpha
Helix 92	AK2	K	252	256	Right-handed 310
Helix 93	AK3	K	267	271	Right-handed 310
Helix 94	AK4	L	97	108	Right-handed alpha
Helix 95	AK5	L	157	161	Right-handed 310
Helix 96	AK6	L	207	219	Right-handed alpha
Helix 97	AK7	L	267	271	Right-handed 310

There are 16 sheets in PDB entry 9H0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	70	first strand
Strand 2	E	77	84	anti-parallel
Strand 3	E	87	91	anti-parallel
Strand 4	E	129	131	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	70	first strand
Strand 2	E	77	84	anti-parallel
Strand 3	E	163	165	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	184	first strand
Strand 2	E	187	194	anti-parallel
Strand 3	E	197	201	anti-parallel
Strand 4	E	238	241	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	184	first strand
Strand 2	E	187	194	anti-parallel
Strand 3	E	273	275	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	70	first strand
Strand 2	F	77	84	anti-parallel
Strand 3	F	87	91	anti-parallel
Strand 4	F	129	131	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	70	first strand
Strand 2	F	77	84	anti-parallel
Strand 3	F	163	165	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	181	first strand
Strand 2	F	187	194	anti-parallel
Strand 3	F	273	276	anti-parallel
Strand 4	F	223	225	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	181	first strand
Strand 2	F	187	194	anti-parallel
Strand 3	F	197	201	anti-parallel
Strand 4	F	238	241	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	67	70	first strand
Strand 2	K	77	84	anti-parallel
Strand 3	K	87	91	anti-parallel
Strand 4	K	129	131	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	67	70	first strand
Strand 2	K	77	84	anti-parallel
Strand 3	K	163	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	181	first strand
Strand 2	K	187	194	anti-parallel
Strand 3	K	273	276	anti-parallel
Strand 4	K	223	225	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	181	first strand
Strand 2	K	187	194	anti-parallel
Strand 3	K	197	201	anti-parallel
Strand 4	K	238	241	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	70	first strand
Strand 2	L	77	84	anti-parallel
Strand 3	L	87	91	anti-parallel
Strand 4	L	128	131	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	70	first strand
Strand 2	L	77	84	anti-parallel
Strand 3	L	163	165	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	177	184	first strand
Strand 2	L	187	194	anti-parallel
Strand 3	L	273	276	anti-parallel
Strand 4	L	223	225	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	177	184	first strand
Strand 2	L	187	194	anti-parallel
Strand 3	L	197	201	anti-parallel
Strand 4	L	238	241	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H0M