Analysis of interatomic Contacts of Structural Units in PDB entry:
9H0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H0O entry

There is 1 chain in PDB entry 9H0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36ALA 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9H0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 64Right-handed alpha
Helix 2
AA2
A
76 87Right-handed alpha
Helix 3
AA3
A
103 111Right-handed alpha
Helix 4
AA4
A
117 123Right-handed 310
Helix 5
AA5
A
131 136Right-handed alpha
Helix 6
AA6
A
169 175Right-handed alpha
Helix 7
AA7
A
182 195Right-handed alpha
Helix 8
AA8
A
205 207Right-handed 310
Helix 9
AA9
A
208 221Right-handed alpha
Helix 10
AB1
A
222 231Right-handed alpha
Helix 11
AB2
A
239 256Right-handed alpha
Helix 12
AB3
A
260 265Right-handed alpha
Helix 13
AB4
A
269 279Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
337 348Right-handed alpha
Helix 16
AB7
A
350 358Right-handed alpha
Helix 17
AB8
A
359 361Right-handed 310
Helix 18
AB9
A
374 382Right-handed alpha
Helix 19
AC1
A
383 386Right-handed 310
Helix 20
AC2
A
406 412Right-handed alpha
Helix 21
AC3
A
413 420Right-handed alpha
Helix 22
AC4
A
424 442Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9H0O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 74first strand
Strand 2
A
37 44parallel
Strand 3
A
93 95parallel
Strand 4
A
320 330anti-parallel
Strand 5
A
156 168anti-parallel
Strand 6
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
282 288parallel
Strand 3
A
156 168anti-parallel
Strand 4
A
320 330anti-parallel
Strand 5
A
389 392parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il