Analysis of interatomic Contacts of Structural Units in PDB entry:
9H1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H1K entry

There are 3 chains in PDB entry 9H1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 260
B
 MET 1LEU 260
C
 G 2513 C 2571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9H1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
33 43Right-handed alpha
Helix 4
AA4
A
57 62Right-handed alpha
Helix 5
AA5
A
73 81Right-handed alpha
Helix 6
AA6
A
99 103Right-handed 310
Helix 7
AA7
A
119 134Right-handed alpha
Helix 8
AA8
A
148 155Right-handed alpha
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
168 180Right-handed alpha
Helix 11
AB2
A
195 197Right-handed 310
Helix 12
AB3
A
215 222Right-handed alpha
Helix 13
AB4
A
238 255Right-handed alpha
Helix 14
AB5
B
8 16Right-handed alpha
Helix 15
AB6
B
19 27Right-handed alpha
Helix 16
AB7
B
33 43Right-handed alpha
Helix 17
AB8
B
57 62Right-handed alpha
Helix 18
AB9
B
73 81Right-handed alpha
Helix 19
AC1
B
99 103Right-handed 310
Helix 20
AC2
B
119 134Right-handed alpha
Helix 21
AC3
B
148 155Right-handed alpha
Helix 22
AC4
B
157 161Right-handed 310
Helix 23
AC5
B
168 179Right-handed alpha
Helix 24
AC6
B
195 197Right-handed 310
Helix 25
AC7
B
215 222Right-handed alpha
Helix 26
AC8
B
238 255Right-handed alpha
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There are 4 sheets in PDB entry 9H1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
68 72parallel
Strand 3
A
47 52parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
28 32anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
137 141parallel
Strand 3
A
110 115parallel
Strand 4
A
203 207parallel
Strand 5
A
183 186parallel
Strand 6
A
224 227parallel
Strand 7
A
192 193parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
47 52anti-parallel
Strand 4
B
68 71parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
137 140parallel
Strand 3
B
110 114parallel
Strand 4
B
203 207parallel
Strand 5
B
183 186parallel
Strand 6
B
224 227parallel
Strand 7
B
192 193parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il