Analysis of interatomic Contacts of Structural Units in PDB entry:
9H1L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H1L entry

There are 22 chains in PDB entry 9H1L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	MET 1	ASN 499
A	ALA 2	LEU 260
B	ALA 2	LEU 260
E	VAL 2	PHE 443
D	VAL 2	PHE 443
C	GLU 4	LYS 260
C	ALA 262	ARG 274
C	ALA 276	SER 402
C	ARG 404	TYR 447
C	TYR 449	GLN 454
C	GLY 456	LYS 553
F	ARG 6	LYS 260
F	ALA 262	ARG 274
F	ALA 276	SER 402
F	ARG 404	TYR 447
F	TYR 449	GLN 454
F	GLY 456	LYS 553
G	ALA 2	LYS 184
H	MET 1	GLU 296
I	ARG 5	GLY 198
K	MET 1	SER 521
L	ILE 10	GLU 56

There are183 helices in PDB entry 9H1L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	14	22	Right-handed alpha
Helix 2	AA2	J	65	74	Right-handed alpha
Helix 3	AA3	J	117	125	Right-handed 310
Helix 4	AA4	J	151	158	Right-handed alpha
Helix 5	AA5	J	206	217	Right-handed alpha
Helix 6	AA6	J	290	295	Right-handed alpha
Helix 7	AA7	J	316	326	Right-handed alpha
Helix 8	AA8	J	350	358	Right-handed alpha
Helix 9	AA9	J	380	392	Right-handed alpha
Helix 10	AB1	J	467	469	Right-handed 310
Helix 11	AB2	A	12	23	Right-handed alpha
Helix 12	AB3	A	35	44	Right-handed alpha
Helix 13	AB4	A	76	81	Right-handed alpha
Helix 14	AB5	A	100	112	Right-handed alpha
Helix 15	AB6	A	130	140	Right-handed alpha
Helix 16	AB7	A	210	218	Right-handed alpha
Helix 17	AB8	A	227	230	Right-handed 310
Helix 18	AB9	A	231	251	Right-handed alpha
Helix 19	AC1	A	255	260	Right-handed 310
Helix 20	AC2	B	12	23	Right-handed alpha
Helix 21	AC3	B	35	44	Right-handed alpha
Helix 22	AC4	B	69	73	Right-handed 310
Helix 23	AC5	B	76	82	Right-handed alpha
Helix 24	AC6	B	100	112	Right-handed alpha
Helix 25	AC7	B	130	140	Right-handed alpha
Helix 26	AC8	B	210	218	Right-handed alpha
Helix 27	AC9	B	227	230	Right-handed 310
Helix 28	AD1	B	231	251	Right-handed alpha
Helix 29	AD2	B	255	260	Right-handed 310
Helix 30	AD3	E	25	28	Right-handed 310
Helix 31	AD4	E	32	44	Right-handed alpha
Helix 32	AD5	E	50	60	Right-handed alpha
Helix 33	AD6	E	77	82	Right-handed alpha
Helix 34	AD7	E	82	94	Right-handed alpha
Helix 35	AD8	E	117	123	Right-handed alpha
Helix 36	AD9	E	128	146	Right-handed alpha
Helix 37	AE1	E	149	151	Right-handed 310
Helix 38	AE2	E	152	161	Right-handed alpha
Helix 39	AE3	E	181	185	Right-handed 310
Helix 40	AE4	E	190	195	Right-handed 310
Helix 41	AE5	E	196	204	Right-handed alpha
Helix 42	AE6	E	207	226	Right-handed alpha
Helix 43	AE7	E	233	245	Right-handed alpha
Helix 44	AE8	E	247	249	Right-handed 310
Helix 45	AE9	E	250	259	Right-handed alpha
Helix 46	AF1	E	263	278	Right-handed alpha
Helix 47	AF2	E	298	322	Right-handed alpha
Helix 48	AF3	E	323	325	Right-handed 310
Helix 49	AF4	E	326	343	Right-handed alpha
Helix 50	AF5	E	346	349	Right-handed 310
Helix 51	AF6	E	350	364	Right-handed alpha
Helix 52	AF7	E	371	375	Right-handed 310
Helix 53	AF8	E	390	399	Right-handed alpha
Helix 54	AF9	E	407	412	Right-handed alpha
Helix 55	AG1	E	412	420	Right-handed alpha
Helix 56	AG2	E	422	427	Right-handed alpha
Helix 57	AG3	E	427	439	Right-handed alpha
Helix 58	AG4	D	25	28	Right-handed 310
Helix 59	AG5	D	32	44	Right-handed alpha
Helix 60	AG6	D	50	60	Right-handed alpha
Helix 61	AG7	D	81	94	Right-handed alpha
Helix 62	AG8	D	117	123	Right-handed alpha
Helix 63	AG9	D	128	146	Right-handed alpha
Helix 64	AH1	D	149	151	Right-handed 310
Helix 65	AH2	D	152	161	Right-handed alpha
Helix 66	AH3	D	181	185	Right-handed 310
Helix 67	AH4	D	196	204	Right-handed alpha
Helix 68	AH5	D	207	226	Right-handed alpha
Helix 69	AH6	D	230	232	Right-handed 310
Helix 70	AH7	D	233	247	Right-handed alpha
Helix 71	AH8	D	250	259	Right-handed alpha
Helix 72	AH9	D	263	278	Right-handed alpha
Helix 73	AI1	D	298	322	Right-handed alpha
Helix 74	AI2	D	323	325	Right-handed 310
Helix 75	AI3	D	326	343	Right-handed alpha
Helix 76	AI4	D	350	363	Right-handed alpha
Helix 77	AI5	D	371	375	Right-handed 310
Helix 78	AI6	D	389	399	Right-handed alpha
Helix 79	AI7	D	407	412	Right-handed alpha
Helix 80	AI8	D	413	420	Right-handed alpha
Helix 81	AI9	D	422	427	Right-handed alpha
Helix 82	AJ1	D	427	439	Right-handed alpha
Helix 83	AJ2	D	440	443	Right-handed 310
Helix 84	AJ3	C	8	16	Right-handed alpha
Helix 85	AJ4	C	31	35	Right-handed 310
Helix 86	AJ5	C	36	53	Right-handed alpha
Helix 87	AJ6	C	87	91	Right-handed 310
Helix 88	AJ7	C	95	107	Right-handed alpha
Helix 89	AJ8	C	114	122	Right-handed alpha
Helix 90	AJ9	C	129	144	Right-handed alpha
Helix 91	AK1	C	158	163	Right-handed 310
Helix 92	AK2	C	173	180	Right-handed alpha
Helix 93	AK3	C	181	185	Right-handed 310
Helix 94	AK4	C	187	192	Right-handed alpha
Helix 95	AK5	C	193	205	Right-handed alpha
Helix 96	AK6	C	215	222	Right-handed alpha
Helix 97	AK7	C	225	243	Right-handed alpha
Helix 98	AK8	C	249	261	Right-handed alpha
Helix 99	AK9	C	272	276	Right-handed 310
Helix 100	AL1	C	281	285	Right-handed 310
Helix 101	AL2	C	286	294	Right-handed alpha
Helix 102	AL3	C	302	319	Right-handed alpha
Helix 103	AL4	C	333	339	Right-handed alpha
Helix 104	AL5	C	344	361	Right-handed alpha
Helix 105	AL6	C	369	391	Right-handed alpha
Helix 106	AL7	C	391	398	Right-handed alpha
Helix 107	AL8	C	401	402	Right-handed alpha
Helix 108	AL9	C	405	421	Right-handed alpha
Helix 109	AM1	C	422	442	Right-handed alpha
Helix 110	AM2	C	450	460	Right-handed alpha
Helix 111	AM3	C	478	482	Right-handed 310
Helix 112	AM4	C	487	502	Right-handed alpha
Helix 113	AM5	C	509	516	Right-handed alpha
Helix 114	AM6	C	527	537	Right-handed alpha
Helix 115	AM7	C	546	550	Right-handed 310
Helix 116	AM8	F	7	16	Right-handed alpha
Helix 117	AM9	F	19	24	Right-handed alpha
Helix 118	AN1	F	24	29	Right-handed alpha
Helix 119	AN2	F	70	74	Right-handed 310
Helix 120	AN3	F	86	91	Right-handed 310
Helix 121	AN4	F	95	107	Right-handed alpha
Helix 122	AN5	F	114	123	Right-handed alpha
Helix 123	AN6	F	129	144	Right-handed alpha
Helix 124	AN7	F	158	162	Right-handed 310
Helix 125	AN8	F	173	179	Right-handed alpha
Helix 126	AN9	F	187	192	Right-handed alpha
Helix 127	AO1	F	193	205	Right-handed alpha
Helix 128	AO2	F	215	222	Right-handed alpha
Helix 129	AO3	F	225	243	Right-handed alpha
Helix 130	AO4	F	249	261	Right-handed alpha
Helix 131	AO5	F	286	294	Right-handed alpha
Helix 132	AO6	F	302	319	Right-handed alpha
Helix 133	AO7	F	334	339	Right-handed alpha
Helix 134	AO8	F	344	361	Right-handed alpha
Helix 135	AO9	F	369	391	Right-handed alpha
Helix 136	AP1	F	391	398	Right-handed alpha
Helix 137	AP2	F	400	421	Right-handed alpha
Helix 138	AP3	F	422	442	Right-handed alpha
Helix 139	AP4	F	450	461	Right-handed alpha
Helix 140	AP5	F	478	482	Right-handed 310
Helix 141	AP6	F	487	501	Right-handed alpha
Helix 142	AP7	F	509	517	Right-handed alpha
Helix 143	AP8	F	527	537	Right-handed alpha
Helix 144	AP9	G	10	28	Right-handed alpha
Helix 145	AQ1	G	126	140	Right-handed alpha
Helix 146	AQ2	G	166	182	Right-handed alpha
Helix 147	AQ3	H	13	24	Right-handed alpha
Helix 148	AQ4	H	48	59	Right-handed alpha
Helix 149	AQ5	H	88	99	Right-handed alpha
Helix 150	AQ6	H	120	129	Right-handed alpha
Helix 151	AQ7	H	140	146	Right-handed alpha
Helix 152	AQ8	H	147	151	Right-handed 310
Helix 153	AQ9	H	185	213	Right-handed alpha
Helix 154	AR1	H	218	230	Right-handed alpha
Helix 155	AR2	H	231	236	Right-handed 310
Helix 156	AR3	H	254	264	Right-handed alpha
Helix 157	AR4	H	272	275	Right-handed alpha
Helix 158	AR5	I	54	64	Right-handed alpha
Helix 159	AR6	I	95	104	Right-handed alpha
Helix 160	AR7	I	115	128	Right-handed alpha
Helix 161	AR8	I	147	151	Right-handed 310
Helix 162	AR9	I	182	196	Right-handed alpha
Helix 163	AS1	K	41	51	Right-handed alpha
Helix 164	AS2	K	77	81	Right-handed 310
Helix 165	AS3	K	104	111	Right-handed alpha
Helix 166	AS4	K	128	140	Right-handed alpha
Helix 167	AS5	K	142	157	Right-handed alpha
Helix 168	AS6	K	166	170	Right-handed 310
Helix 169	AS7	K	172	185	Right-handed alpha
Helix 170	AS8	K	201	217	Right-handed alpha
Helix 171	AS9	K	229	237	Right-handed alpha
Helix 172	AT1	K	254	264	Right-handed alpha
Helix 173	AT2	K	323	332	Right-handed alpha
Helix 174	AT3	K	361	366	Right-handed alpha
Helix 175	AT4	K	382	388	Right-handed alpha
Helix 176	AT5	K	399	412	Right-handed alpha
Helix 177	AT6	K	414	422	Right-handed alpha
Helix 178	AT7	K	425	429	Right-handed 310
Helix 179	AT8	K	432	444	Right-handed alpha
Helix 180	AT9	K	460	479	Right-handed alpha
Helix 181	AU1	K	488	495	Right-handed alpha
Helix 182	AU2	K	512	521	Right-handed alpha
Helix 183	AU3	L	48	50	Right-handed 310

There are 34 sheets in PDB entry 9H1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	177	182	first strand
Strand 2	J	30	36	anti-parallel
Strand 3	J	194	196	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	47	first strand
Strand 2	J	58	59	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	113	114	first strand
Strand 2	J	128	129	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	221	224	first strand
Strand 2	J	299	305	anti-parallel
Strand 3	J	199	203	parallel
Strand 4	J	280	286	anti-parallel
Strand 5	J	254	258	anti-parallel
Strand 6	J	267	270	anti-parallel
Strand 7	J	231	234	anti-parallel
Strand 8	J	226	227	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	330	333	first strand
Strand 2	J	359	365	parallel
Strand 3	J	342	347	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	371	375	first strand
Strand 2	J	471	477	anti-parallel
Strand 3	J	437	441	anti-parallel
Strand 4	J	451	454	anti-parallel
Strand 5	J	410	413	anti-parallel
Strand 6	J	398	407	anti-parallel
Strand 7	J	492	497	anti-parallel
Strand 8	J	371	375	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	152	154	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	188	192	anti-parallel
Strand 3	A	198	206	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	152	154	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	187	192	anti-parallel
Strand 3	B	198	206	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	49	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	287	first strand
Strand 2	E	290	296	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	17	23	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	111	115	anti-parallel
Strand 3	D	45	49	anti-parallel
Strand 4	D	175	176	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	286	first strand
Strand 2	D	292	296	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	81	85	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	171	first strand
Strand 2	C	208	213	anti-parallel
Strand 3	C	108	112	anti-parallel
Strand 4	C	264	265	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	84	85	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	171	first strand
Strand 2	F	208	213	anti-parallel
Strand 3	F	108	112	anti-parallel
Strand 4	F	264	265	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	34	42	parallel
Strand 3	G	47	54	anti-parallel
Strand 4	G	156	161	anti-parallel
Strand 5	G	146	151	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	33	first strand
Strand 2	H	37	45	anti-parallel
Strand 3	H	2	10	anti-parallel
Strand 4	H	62	64	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	173	first strand
Strand 2	H	157	160	parallel
Strand 3	H	132	136	parallel
Strand 4	H	72	77	parallel
Strand 5	H	102	107	parallel
Strand 6	I	8	11	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	244	first strand
Strand 2	H	248	251	anti-parallel
Strand 3	H	287	291	anti-parallel
Strand 4	H	276	280	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	270	271	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	68	72	anti-parallel
Strand 3	I	38	42	parallel
Strand 4	I	107	111	parallel
Strand 5	I	134	138	parallel
Strand 6	I	167	173	parallel
Strand 7	I	153	154	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	80	first strand
Strand 2	I	91	92	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	27	first strand
Strand 2	K	2	6	anti-parallel
Strand 3	K	62	64	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	112	115	first strand
Strand 2	K	190	194	parallel
Strand 3	K	222	226	parallel
Strand 4	K	31	36	parallel
Strand 5	K	239	244	parallel
Strand 6	K	247	253	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	306	308	first strand
Strand 2	K	281	283	anti-parallel
Strand 3	K	342	345	anti-parallel
Strand 4	K	350	352	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	287	292	first strand
Strand 2	K	296	302	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	368	371	first strand
Strand 2	K	449	453	parallel
Strand 3	K	481	485	parallel
Strand 4	K	313	318	parallel
Strand 5	K	500	502	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	15	18	anti-parallel
Strand 3	L	52	54	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	39	40	anti-parallel
Strand 3	L	46	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H1L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H1L