Analysis of interatomic Contacts of Structural Units in PDB entry:
9H1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H1Y entry

There are 5 chains in PDB entry 9H1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 20ASP 1711
B
 ASP 129PRO 182
C
 ASP 129THR 166
D
 ASP 129THR 166
E
 ASP 129THR 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 90 helices in PDB entry 9H1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 42Right-handed alpha
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
81 100Right-handed alpha
Helix 6
AA6
A
101 103Right-handed 310
Helix 7
AA7
A
104 118Right-handed alpha
Helix 8
AA8
A
118 139Right-handed alpha
Helix 9
AA9
A
176 201Right-handed alpha
Helix 10
AB1
A
208 221Right-handed alpha
Helix 11
AB2
A
225 249Right-handed alpha
Helix 12
AB3
A
255 260Right-handed 310
Helix 13
AB4
A
261 266Right-handed alpha
Helix 14
AB5
A
266 280Right-handed alpha
Helix 15
AB6
A
280 290Right-handed alpha
Helix 16
AB7
A
300 312Right-handed alpha
Helix 17
AB8
A
318 346Right-handed alpha
Helix 18
AB9
A
358 368Right-handed alpha
Helix 19
AC1
A
371 382Right-handed 310
Helix 20
AC2
A
397 402Right-handed alpha
Helix 21
AC3
A
410 417Right-handed 310
Helix 22
AC4
A
419 428Right-handed alpha
Helix 23
AC5
A
442 449Right-handed alpha
Helix 24
AC6
A
454 465Right-handed alpha
Helix 25
AC7
A
468 471Right-handed 310
Helix 26
AC8
A
494 512Right-handed alpha
Helix 27
AC9
A
513 515Right-handed 310
Helix 28
AD1
A
516 521Right-handed alpha
Helix 29
AD2
A
524 540Right-handed alpha
Helix 30
AD3
A
559 575Right-handed alpha
Helix 31
AD4
A
579 586Right-handed alpha
Helix 32
AD5
A
587 589Right-handed 310
Helix 33
AD6
A
627 645Right-handed alpha
Helix 34
AD7
A
670 688Right-handed alpha
Helix 35
AD8
A
694 696Right-handed 310
Helix 36
AD9
A
720 725Right-handed alpha
Helix 37
AE1
A
738 756Right-handed alpha
Helix 38
AE2
A
759 779Right-handed alpha
Helix 39
AE3
A
780 785Right-handed alpha
Helix 40
AE4
A
786 795Right-handed alpha
Helix 41
AE5
A
809 813Right-handed 310
Helix 42
AE6
A
819 835Right-handed alpha
Helix 43
AE7
A
838 847Right-handed alpha
Helix 44
AE8
A
855 862Right-handed alpha
Helix 45
AE9
A
877 888Right-handed alpha
Helix 46
AF1
A
893 899Right-handed alpha
Helix 47
AF2
A
902 915Right-handed alpha
Helix 48
AF3
A
921 931Right-handed alpha
Helix 49
AF4
A
932 947Right-handed alpha
Helix 50
AF5
A
947 955Right-handed alpha
Helix 51
AF6
A
962 977Right-handed alpha
Helix 52
AF7
A
986 990Right-handed 310
Helix 53
AF8
A
993 1007Right-handed alpha
Helix 54
AF9
A
1017 1021Right-handed alpha
Helix 55
AG1
A
1031 1035Right-handed 310
Helix 56
AG2
A
1050 1054Right-handed 310
Helix 57
AG3
A
1084 1100Right-handed alpha
Helix 58
AG4
A
1104 1119Right-handed alpha
Helix 59
AG5
A
1151 1156Right-handed alpha
Helix 60
AG6
A
1177 1196Right-handed alpha
Helix 61
AG7
A
1210 1214Right-handed 310
Helix 62
AG8
A
1255 1278Right-handed alpha
Helix 63
AG9
A
1279 1283Right-handed 310
Helix 64
AH1
A
1297 1303Right-handed alpha
Helix 65
AH2
A
1304 1320Right-handed alpha
Helix 66
AH3
A
1322 1335Right-handed alpha
Helix 67
AH4
A
1340 1348Right-handed alpha
Helix 68
AH5
A
1350 1357Right-handed alpha
Helix 69
AH6
A
1357 1364Right-handed alpha
Helix 70
AH7
A
1371 1381Right-handed alpha
Helix 71
AH8
A
1381 1386Right-handed alpha
Helix 72
AH9
A
1386 1394Right-handed alpha
Helix 73
AI1
A
1398 1403Right-handed alpha
Helix 74
AI2
A
1405 1407Right-handed 310
Helix 75
AI3
A
1408 1416Right-handed alpha
Helix 76
AI4
A
1450 1465Right-handed alpha
Helix 77
AI5
A
1476 1485Right-handed alpha
Helix 78
AI6
A
1499 1509Right-handed alpha
Helix 79
AI7
A
1512 1518Right-handed alpha
Helix 80
AI8
A
1519 1524Right-handed alpha
Helix 81
AI9
A
1586 1590Right-handed 310
Helix 82
AJ1
A
1596 1616Right-handed alpha
Helix 83
AJ2
A
1622 1641Right-handed alpha
Helix 84
AJ3
A
1682 1688Right-handed alpha
Helix 85
AJ4
A
1691 1698Right-handed alpha
Helix 86
AJ5
A
1701 1709Right-handed alpha
Helix 87
AJ6
B
130 166Right-handed alpha
Helix 88
AJ7
C
132 165Right-handed alpha
Helix 89
AJ8
D
130 165Right-handed alpha
Helix 90
AJ9
E
130 166Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9H1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
155 159anti-parallel
Strand 3
A
162 164anti-parallel
Strand 4
A
174 175anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
384 386anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
473 478anti-parallel
Strand 3
A
591 594parallel
Strand 4
A
615 617anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 664first strand
Strand 2
A
544 550anti-parallel
Strand 3
A
698 701anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 706first strand
Strand 2
A
711 713anti-parallel
Strand 3
A
716 717anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1026first strand
Strand 2
A
1204 1208anti-parallel
Strand 3
A
1040 1043anti-parallel
Strand 4
A
1158 1160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1433 1434first strand
Strand 2
A
1578 1579anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1490 1493first strand
Strand 2
A
1468 1471parallel
Strand 3
A
1533 1534parallel
Strand 4
A
1542 1547parallel
Strand 5
A
1563 1567anti-parallel
Strand 6
A
1570 1571anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1658 1662first strand
Strand 2
A
1648 1655anti-parallel
Strand 3
A
1671 1675anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il