Analysis of interatomic Contacts of Structural Units in PDB entry:
9H29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H29 entry

There are 2 chains in PDB entry 9H29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLU 289
B
 LYS 4ARG 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9H29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
15 32Right-handed alpha
Helix 3
AA3
A
34 46Right-handed alpha
Helix 4
AA4
A
64 84Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
102 110Right-handed 310
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
164 174Right-handed alpha
Helix 9
AA9
A
189 196Right-handed alpha
Helix 10
AB1
A
202 212Right-handed alpha
Helix 11
AB2
A
213 224Right-handed 310
Helix 12
AB3
A
225 245Right-handed alpha
Helix 13
AB4
A
273 277Right-handed 310
Helix 14
AB5
B
10 14Right-handed 310
Helix 15
AB6
B
15 32Right-handed alpha
Helix 16
AB7
B
33 48Right-handed alpha
Helix 17
AB8
B
64 84Right-handed alpha
Helix 18
AB9
B
93 98Right-handed alpha
Helix 19
AC1
B
102 110Right-handed 310
Helix 20
AC2
B
119 123Right-handed 310
Helix 21
AC3
B
164 173Right-handed alpha
Helix 22
AC4
B
189 196Right-handed alpha
Helix 23
AC5
B
202 212Right-handed alpha
Helix 24
AC6
B
213 224Right-handed 310
Helix 25
AC7
B
225 245Right-handed alpha
Helix 26
AC8
B
272 277Right-handed alpha
Helix 27
AC9
B
278 282Right-handed 310
Helix 28
AD1
B
287 291Right-handed alpha
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There are 2 sheets in PDB entry 9H29. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
284 286parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
284 286parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il