Analysis of interatomic Contacts of Structural Units in PDB entry:
9H2I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H2I entry

There are 3 chains in PDB entry 9H2I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 318LYS 365
B
 SER 2LYS 473
C
 SER 2ALA 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 9H2I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
322 328Right-handed alpha
Helix 2
AA2
A
329 339Right-handed alpha
Helix 3
AA3
A
342 346Right-handed 310
Helix 4
AA4
A
350 354Right-handed 310
Helix 5
AA5
A
356 365Right-handed alpha
Helix 6
AA6
B
15 28Right-handed alpha
Helix 7
AA7
B
42 49Right-handed alpha
Helix 8
AA8
B
49 69Right-handed alpha
Helix 9
AA9
B
70 72Right-handed 310
Helix 10
AB1
B
82 108Right-handed alpha
Helix 11
AB2
B
164 171Right-handed alpha
Helix 12
AB3
B
184 198Right-handed alpha
Helix 13
AB4
B
215 229Right-handed alpha
Helix 14
AB5
B
281 286Right-handed 310
Helix 15
AB6
B
312 316Right-handed 310
Helix 16
AB7
B
320 336Right-handed alpha
Helix 17
AB8
B
363 371Right-handed alpha
Helix 18
AB9
B
384 390Right-handed alpha
Helix 19
AC1
B
417 420Right-handed 310
Helix 20
AC2
B
421 431Right-handed alpha
Helix 21
AC3
B
434 441Right-handed alpha
Helix 22
AC4
B
449 461Right-handed alpha
Helix 23
AC5
C
15 28Right-handed alpha
Helix 24
AC6
C
42 49Right-handed alpha
Helix 25
AC7
C
49 69Right-handed alpha
Helix 26
AC8
C
70 72Right-handed 310
Helix 27
AC9
C
82 108Right-handed alpha
Helix 28
AD1
C
164 171Right-handed alpha
Helix 29
AD2
C
184 198Right-handed alpha
Helix 30
AD3
C
215 229Right-handed alpha
Helix 31
AD4
C
277 280Right-handed 310
Helix 32
AD5
C
281 286Right-handed 310
Helix 33
AD6
C
312 316Right-handed 310
Helix 34
AD7
C
320 336Right-handed alpha
Helix 35
AD8
C
363 370Right-handed alpha
Helix 36
AD9
C
384 390Right-handed alpha
Helix 37
AE1
C
417 420Right-handed 310
Helix 38
AE2
C
421 431Right-handed alpha
Helix 39
AE3
C
434 441Right-handed alpha
Helix 40
AE4
C
449 460Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 9H2I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
32 36parallel
Strand 3
B
3 12parallel
Strand 4
B
132 143parallel
Strand 5
B
124 129anti-parallel
Strand 6
B
116 121anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
32 36parallel
Strand 3
B
3 12parallel
Strand 4
B
132 143parallel
Strand 5
B
308 310parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
C
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
C
74 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
273 275anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
266 269parallel
Strand 3
B
177 181parallel
Strand 4
B
200 204parallel
Strand 5
B
230 233parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 244first strand
Strand 2
B
247 254anti-parallel
Strand 3
B
262 264anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 351first strand
Strand 2
B
356 361anti-parallel
Strand 3
B
408 415anti-parallel
Strand 4
B
396 402anti-parallel
Strand 5
B
374 380anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
308 310first strand
Strand 2
C
132 143parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
111 121anti-parallel
Strand 5
C
32 36parallel
Strand 6
C
3 12parallel
Strand 7
C
132 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
273 275anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
266 269parallel
Strand 3
C
177 181parallel
Strand 4
C
200 205parallel
Strand 5
C
230 234parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
236 244first strand
Strand 2
C
247 254anti-parallel
Strand 3
C
262 264anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
349 351first strand
Strand 2
C
356 361anti-parallel
Strand 3
C
408 415anti-parallel
Strand 4
C
396 402anti-parallel
Strand 5
C
374 380anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il