Analysis of interatomic Contacts of Structural Units in PDB entry:
9H2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H2M entry

There are 5 chains in PDB entry 9H2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 1385
B
 G -11 U 14
C
 A 8 U 72
D
 C 2 T 28
E
 A 3 G 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9H2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
104 106Right-handed 310
Helix 4
AA4
A
121 132Right-handed alpha
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
180 197Right-handed alpha
Helix 8
AA8
A
204 214Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
236 247Right-handed alpha
Helix 11
AB2
A
287 306Right-handed alpha
Helix 12
AB3
A
315 343Right-handed alpha
Helix 13
AB4
A
344 352Right-handed alpha
Helix 14
AB5
A
358 365Right-handed alpha
Helix 15
AB6
A
368 381Right-handed alpha
Helix 16
AB7
A
386 396Right-handed alpha
Helix 17
AB8
A
404 409Right-handed 310
Helix 18
AB9
A
411 427Right-handed alpha
Helix 19
AC1
A
430 436Right-handed alpha
Helix 20
AC2
A
436 446Right-handed alpha
Helix 21
AC3
A
477 482Right-handed alpha
Helix 22
AC4
A
483 496Right-handed alpha
Helix 23
AC5
A
512 526Right-handed alpha
Helix 24
AC6
A
543 556Right-handed alpha
Helix 25
AC7
A
560 572Right-handed alpha
Helix 26
AC8
A
590 601Right-handed alpha
Helix 27
AC9
A
602 608Right-handed alpha
Helix 28
AD1
A
611 625Right-handed alpha
Helix 29
AD2
A
627 636Right-handed alpha
Helix 30
AD3
A
637 639Right-handed 310
Helix 31
AD4
A
643 653Right-handed alpha
Helix 32
AD5
A
663 667Right-handed alpha
Helix 33
AD6
A
677 684Right-handed alpha
Helix 34
AD7
A
691 697Right-handed alpha
Helix 35
AD8
A
704 717Right-handed alpha
Helix 36
AD9
A
720 727Right-handed alpha
Helix 37
AE1
A
731 753Right-handed alpha
Helix 38
AE2
A
778 793Right-handed alpha
Helix 39
AE3
A
811 814Right-handed 310
Helix 40
AE4
A
815 825Right-handed alpha
Helix 41
AE5
A
867 872Right-handed 310
Helix 42
AE6
A
879 886Right-handed alpha
Helix 43
AE7
A
886 896Right-handed alpha
Helix 44
AE8
A
900 912Right-handed alpha
Helix 45
AE9
A
916 929Right-handed alpha
Helix 46
AF1
A
932 947Right-handed alpha
Helix 47
AF2
A
966 977Right-handed alpha
Helix 48
AF3
A
988 1008Right-handed alpha
Helix 49
AF4
A
1011 1016Right-handed alpha
Helix 50
AF5
A
1024 1034Right-handed alpha
Helix 51
AF6
A
1041 1046Right-handed 310
Helix 52
AF7
A
1076 1088Right-handed alpha
Helix 53
AF8
A
1138 1143Right-handed alpha
Helix 54
AF9
A
1181 1188Right-handed alpha
Helix 55
AG1
A
1190 1195Right-handed alpha
Helix 56
AG2
A
1245 1257Right-handed alpha
Helix 57
AG3
A
1264 1273Right-handed alpha
Helix 58
AG4
A
1274 1291Right-handed alpha
Helix 59
AG5
A
1294 1305Right-handed alpha
Helix 60
AG6
A
1306 1308Right-handed 310
Helix 61
AG7
A
1312 1322Right-handed alpha
Helix 62
AG8
A
1331 1335Right-handed 310
Helix 63
AG9
A
1359 1363Right-handed 310
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There are 12 sheets in PDB entry 9H2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
6 10anti-parallel
Strand 3
A
759 762parallel
Strand 4
A
961 964parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1377 1381parallel
Strand 4
A
1365 1370anti-parallel
Strand 5
A
1211 1215anti-parallel
Strand 6
A
1220 1226anti-parallel
Strand 7
A
1234 1238anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
1093 1096parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
658 662anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
578 580anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 847first strand
Strand 2
A
862 865anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1106first strand
Strand 2
A
1109 1111anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1132first strand
Strand 2
A
1144 1145anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1167 1178first strand
Strand 2
A
1150 1162anti-parallel
Strand 3
A
1201 1207anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1343 1345first strand
Strand 2
A
1348 1350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il