Analysis of interatomic Contacts of Structural Units in PDB entry:
9H2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H2Q entry

There are 2 chains in PDB entry 9H2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 361PHE 646
B
 GLU 307GLN 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9H2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
361 377Right-handed alpha
Helix 2
AA2
A
385 404Right-handed alpha
Helix 3
AA3
A
411 427Right-handed alpha
Helix 4
AA4
A
429 448Right-handed alpha
Helix 5
AA5
A
451 471Right-handed alpha
Helix 6
AA6
A
477 499Right-handed alpha
Helix 7
AA7
A
500 516Right-handed alpha
Helix 8
AA8
A
533 544Right-handed alpha
Helix 9
AA9
A
547 562Right-handed alpha
Helix 10
AB1
A
572 585Right-handed alpha
Helix 11
AB2
A
600 614Right-handed alpha
Helix 12
AB3
A
633 646Right-handed alpha
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There are 7 sheets in PDB entry 9H2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 319first strand
Strand 2
B
600 605anti-parallel
Strand 3
B
592 596anti-parallel
Strand 4
B
580 585anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 330first strand
Strand 2
B
336 341anti-parallel
Strand 3
B
346 351anti-parallel
Strand 4
B
356 362anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
380 385anti-parallel
Strand 3
B
389 394anti-parallel
Strand 4
B
399 405anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 416first strand
Strand 2
B
422 427anti-parallel
Strand 3
B
431 436anti-parallel
Strand 4
B
441 447anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 457first strand
Strand 2
B
461 466anti-parallel
Strand 3
B
470 475anti-parallel
Strand 4
B
481 486anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 496first strand
Strand 2
B
502 507anti-parallel
Strand 3
B
511 516anti-parallel
Strand 4
B
521 526anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 542first strand
Strand 2
B
548 552anti-parallel
Strand 3
B
558 562anti-parallel
Strand 4
B
568 572anti-parallel
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