Analysis of interatomic Contacts of Structural Units in PDB entry:
9H35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H35 entry

There are 4 chains in PDB entry 9H35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1285	PRO 1422
B	ASN 1285	PRO 1422
C	ASN 1285	LEU 1423
D	ASN 1285	LEU 1423

There are 24 helices in PDB entry 9H35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1297	1308	Right-handed alpha
Helix 2	AA2	A	1313	1327	Right-handed alpha
Helix 3	AA3	A	1354	1358	Right-handed 310
Helix 4	AA4	A	1382	1385	Right-handed 310
Helix 5	AA5	A	1390	1393	Right-handed 310
Helix 6	AA6	A	1407	1417	Right-handed alpha
Helix 7	AA7	A	1418	1421	Right-handed 310
Helix 8	AA8	B	1297	1308	Right-handed alpha
Helix 9	AA9	B	1313	1327	Right-handed alpha
Helix 10	AB1	B	1362	1366	Right-handed 310
Helix 11	AB2	B	1382	1385	Right-handed 310
Helix 12	AB3	B	1389	1393	Right-handed 310
Helix 13	AB4	B	1407	1417	Right-handed alpha
Helix 14	AB5	B	1418	1421	Right-handed 310
Helix 15	AB6	C	1297	1308	Right-handed alpha
Helix 16	AB7	C	1313	1327	Right-handed alpha
Helix 17	AB8	C	1382	1385	Right-handed 310
Helix 18	AB9	C	1407	1416	Right-handed alpha
Helix 19	AC1	C	1417	1420	Right-handed 310
Helix 20	AC2	D	1297	1308	Right-handed alpha
Helix 21	AC3	D	1313	1327	Right-handed alpha
Helix 22	AC4	D	1382	1385	Right-handed 310
Helix 23	AC5	D	1389	1393	Right-handed 310
Helix 24	AC6	D	1407	1418	Right-handed alpha

There are 9 sheets in PDB entry 9H35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1309	1310	first strand
Strand 2	A	1369	1375	anti-parallel
Strand 3	A	1345	1348	anti-parallel
Strand 4	A	1329	1336	anti-parallel
Strand 5	A	1288	1295	parallel
Strand 6	A	1405	1406	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1341	1342	first strand
Strand 2	A	1379	1380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1388	1389	first strand
Strand 2	A	1395	1396	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1309	1310	first strand
Strand 2	B	1369	1375	anti-parallel
Strand 3	B	1345	1348	anti-parallel
Strand 4	B	1329	1336	anti-parallel
Strand 5	B	1288	1295	parallel
Strand 6	B	1405	1406	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1341	1342	first strand
Strand 2	B	1379	1380	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1309	1310	first strand
Strand 2	C	1369	1375	anti-parallel
Strand 3	C	1345	1348	anti-parallel
Strand 4	C	1329	1336	anti-parallel
Strand 5	C	1288	1295	parallel
Strand 6	C	1404	1406	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1341	1342	first strand
Strand 2	C	1379	1380	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1309	1310	first strand
Strand 2	D	1369	1375	anti-parallel
Strand 3	D	1345	1348	anti-parallel
Strand 4	D	1329	1336	anti-parallel
Strand 5	D	1288	1295	parallel
Strand 6	D	1404	1406	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1341	1342	first strand
Strand 2	D	1379	1380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H35

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H35