Analysis of interatomic Contacts of Structural Units in PDB entry:
9H39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H39 entry

There are 4 chains in PDB entry 9H39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 34	LEU 248
B	GLN 34	ILE 250
C	GLN 1	HIS 119
D	GLN 1	HIS 120

There are 22 helices in PDB entry 9H39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	43	Right-handed 310
Helix 2	AA2	A	48	53	Right-handed 310
Helix 3	AA3	A	77	86	Right-handed alpha
Helix 4	AA4	A	88	96	Right-handed alpha
Helix 5	AA5	A	137	144	Right-handed alpha
Helix 6	AA6	A	151	158	Right-handed alpha
Helix 7	AA7	A	182	188	Right-handed alpha
Helix 8	AA8	A	203	211	Right-handed alpha
Helix 9	AA9	A	214	222	Right-handed alpha
Helix 10	AB1	B	39	43	Right-handed 310
Helix 11	AB2	B	48	53	Right-handed 310
Helix 12	AB3	B	77	86	Right-handed alpha
Helix 13	AB4	B	88	97	Right-handed alpha
Helix 14	AB5	B	137	144	Right-handed alpha
Helix 15	AB6	B	151	158	Right-handed alpha
Helix 16	AB7	B	182	188	Right-handed alpha
Helix 17	AB8	B	203	211	Right-handed alpha
Helix 18	AB9	B	214	222	Right-handed alpha
Helix 19	AC1	C	61	64	Right-handed 310
Helix 20	AC2	C	83	87	Right-handed 310
Helix 21	AC3	D	61	64	Right-handed 310
Helix 22	AC4	D	83	87	Right-handed 310

There are 14 sheets in PDB entry 9H39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	122	130	anti-parallel
Strand 3	A	109	119	anti-parallel
Strand 4	A	61	69	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	122	130	anti-parallel
Strand 3	A	171	176	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	235	240	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	C	18	28	parallel
Strand 3	C	2	7	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	C	18	28	parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	122	130	anti-parallel
Strand 3	B	109	119	anti-parallel
Strand 4	B	61	69	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	122	130	anti-parallel
Strand 3	B	171	176	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	235	240	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	D	18	28	parallel
Strand 3	D	2	7	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	D	18	28	parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	112	117	parallel
Strand 3	C	88	97	anti-parallel
Strand 4	C	30	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	112	117	parallel
Strand 3	C	88	97	anti-parallel
Strand 4	C	104	108	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	112	117	parallel
Strand 3	D	88	97	anti-parallel
Strand 4	D	30	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	112	117	parallel
Strand 3	D	88	97	anti-parallel
Strand 4	D	104	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H39

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H39