Analysis of interatomic Contacts of Structural Units in PDB entry:
9H3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H3D entry

There are 12 chains in PDB entry 9H3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2PRO 20
B
 ILE 2LEU 14
C
 ILE 2THR 21
D
 THR 20SER 167
E
 LEU 21SER 167
F
 LEU 21SER 167
G
 ILE 2PRO 16
H
 ILE 2ALA 13
I
 ILE 2ILE 19
J
 LEU 21SER 167
K
 THR 20SER 167
L
 THR 20SER 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9H3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
B
3 7Right-handed 310
Helix 3
AA3
C
3 7Right-handed 310
Helix 4
AA4
G
3 7Right-handed 310
Helix 5
AA5
H
3 7Right-handed 310
Helix 6
AA6
I
3 7Right-handed 310
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There are 18 sheets in PDB entry 9H3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 35first strand
Strand 2
D
155 165anti-parallel
Strand 3
D
74 86anti-parallel
Strand 4
D
123 129anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 59first strand
Strand 2
D
24 29anti-parallel
Strand 3
D
155 165anti-parallel
Strand 4
D
74 86anti-parallel
Strand 5
D
133 137anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
68 70anti-parallel
Strand 3
D
142 151anti-parallel
Strand 4
D
95 102anti-parallel
Strand 5
D
114 117anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 35first strand
Strand 2
E
155 166anti-parallel
Strand 3
E
74 85anti-parallel
Strand 4
E
125 129anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 59first strand
Strand 2
E
24 29anti-parallel
Strand 3
E
155 166anti-parallel
Strand 4
E
74 85anti-parallel
Strand 5
E
133 137anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 63first strand
Strand 2
E
68 70anti-parallel
Strand 3
E
142 151anti-parallel
Strand 4
E
94 102anti-parallel
Strand 5
E
114 118anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
34 35first strand
Strand 2
F
155 166anti-parallel
Strand 3
F
74 86anti-parallel
Strand 4
F
123 129anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 59first strand
Strand 2
F
24 29anti-parallel
Strand 3
F
155 166anti-parallel
Strand 4
F
74 86anti-parallel
Strand 5
F
133 137anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 63first strand
Strand 2
F
68 70anti-parallel
Strand 3
F
142 151anti-parallel
Strand 4
F
94 102anti-parallel
Strand 5
F
114 118anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
34 35first strand
Strand 2
J
155 167anti-parallel
Strand 3
J
74 86anti-parallel
Strand 4
J
123 129anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
58 59first strand
Strand 2
J
24 29anti-parallel
Strand 3
J
155 167anti-parallel
Strand 4
J
74 86anti-parallel
Strand 5
J
133 137anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
61 63first strand
Strand 2
J
68 70anti-parallel
Strand 3
J
142 151anti-parallel
Strand 4
J
95 102anti-parallel
Strand 5
J
114 117anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
34 35first strand
Strand 2
K
155 166anti-parallel
Strand 3
K
74 85anti-parallel
Strand 4
K
125 129anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
58 59first strand
Strand 2
K
24 29anti-parallel
Strand 3
K
155 166anti-parallel
Strand 4
K
74 85anti-parallel
Strand 5
K
133 137anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
61 63first strand
Strand 2
K
68 70anti-parallel
Strand 3
K
142 151anti-parallel
Strand 4
K
94 102anti-parallel
Strand 5
K
114 118anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
34 35first strand
Strand 2
L
155 167anti-parallel
Strand 3
L
74 85anti-parallel
Strand 4
L
125 129anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 59first strand
Strand 2
L
24 29anti-parallel
Strand 3
L
155 167anti-parallel
Strand 4
L
74 85anti-parallel
Strand 5
L
133 137anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
61 63first strand
Strand 2
L
68 70anti-parallel
Strand 3
L
142 151anti-parallel
Strand 4
L
94 102anti-parallel
Strand 5
L
114 118anti-parallel
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