Analysis of interatomic Contacts of Structural Units in PDB entry:
9H3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H3P entry

There are 22 chains in PDB entry 9H3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	PRO 7	LYS 46
A	G 1	U 2903
B	U 1	A 119
D	MET 1	ALA 209
E	MET 1	ALA 201
F	ALA 1	ARG 177
J	MET 1	ILE 142
K	MET 1	VAL 122
L	ARG 2	GLU 144
N	MET 1	GLU 120
O	ASP 2	PHE 117
P	SER 1	ASN 114
Q	ALA 1	ALA 117
R	MET 1	ALA 103
T	MET 1	LEU 93
U	ALA 1	ILE 102
V	MET 1	ALA 94
W	GLU 13	GLU 81
X	SER 1	TYR 77
Y	MET 1	ALA 61
Z	ALA 1	GLU 58
G	SER 1	LYS 176

There are 65 helices in PDB entry 9H3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	8	17	Right-handed alpha
Helix 2	AA2	2	17	23	Right-handed alpha
Helix 3	AA3	2	24	38	Right-handed alpha
Helix 4	AA4	D	61	72	Right-handed alpha
Helix 5	AA5	D	97	101	Right-handed 310
Helix 6	AA6	D	120	125	Right-handed alpha
Helix 7	AA7	E	15	20	Right-handed alpha
Helix 8	AA8	E	24	40	Right-handed alpha
Helix 9	AA9	E	97	116	Right-handed alpha
Helix 10	AB1	E	130	142	Right-handed alpha
Helix 11	AB2	E	154	161	Right-handed alpha
Helix 12	AB3	E	176	183	Right-handed alpha
Helix 13	AB4	E	190	201	Right-handed alpha
Helix 14	AB5	F	2	20	Right-handed alpha
Helix 15	AB6	F	23	27	Right-handed 310
Helix 16	AB7	F	40	44	Right-handed 310
Helix 17	AB8	F	46	60	Right-handed alpha
Helix 18	AB9	F	92	106	Right-handed alpha
Helix 19	AC1	F	133	137	Right-handed 310
Helix 20	AC2	F	161	172	Right-handed alpha
Helix 21	AC3	J	24	38	Right-handed alpha
Helix 22	AC4	J	58	62	Right-handed 310
Helix 23	AC5	J	67	72	Right-handed alpha
Helix 24	AC6	J	89	96	Right-handed alpha
Helix 25	AC7	J	96	109	Right-handed alpha
Helix 26	AC8	J	112	121	Right-handed alpha
Helix 27	AC9	J	132	136	Right-handed 310
Helix 28	AD1	K	109	111	Right-handed 310
Helix 29	AD2	K	112	118	Right-handed alpha
Helix 30	AD3	L	69	74	Right-handed alpha
Helix 31	AD4	L	128	139	Right-handed alpha
Helix 32	AD5	N	13	32	Right-handed alpha
Helix 33	AD6	N	37	56	Right-handed alpha
Helix 34	AD7	N	59	69	Right-handed alpha
Helix 35	AD8	N	72	79	Right-handed alpha
Helix 36	AD9	N	82	88	Right-handed alpha
Helix 37	AE1	O	3	22	Right-handed alpha
Helix 38	AE2	O	55	60	Right-handed alpha
Helix 39	AE3	O	67	86	Right-handed alpha
Helix 40	AE4	O	101	113	Right-handed alpha
Helix 41	AE5	P	2	12	Right-handed alpha
Helix 42	AE6	P	96	100	Right-handed 310
Helix 43	AE7	P	104	108	Right-handed 310
Helix 44	AE8	Q	5	20	Right-handed alpha
Helix 45	AE9	Q	25	30	Right-handed alpha
Helix 46	AF1	Q	30	72	Right-handed alpha
Helix 47	AF2	Q	74	85	Right-handed alpha
Helix 48	AF3	Q	90	101	Right-handed alpha
Helix 49	AF4	Q	101	117	Right-handed alpha
Helix 50	AF5	T	3	10	Right-handed alpha
Helix 51	AF6	T	17	28	Right-handed alpha
Helix 52	AF7	T	39	52	Right-handed alpha
Helix 53	AF8	V	13	23	Right-handed alpha
Helix 54	AF9	V	44	52	Right-handed alpha
Helix 55	AG1	V	54	58	Right-handed 310
Helix 56	AG2	X	51	62	Right-handed alpha
Helix 57	AG3	X	62	73	Right-handed alpha
Helix 58	AG4	Y	2	7	Right-handed alpha
Helix 59	AG5	Y	9	35	Right-handed alpha
Helix 60	AG6	Y	41	46	Right-handed alpha
Helix 61	AG7	Y	48	56	Right-handed alpha
Helix 62	AG8	Z	16	27	Right-handed alpha
Helix 63	AG9	Z	40	50	Right-handed alpha
Helix 64	AH1	G	59	80	Right-handed alpha
Helix 65	AH2	G	136	150	Right-handed alpha

There are 30 sheets in PDB entry 9H3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	175	first strand
Strand 2	D	107	112	anti-parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	4	15	anti-parallel
Strand 5	D	21	28	anti-parallel
Strand 6	D	186	190	anti-parallel
Strand 7	D	177	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	32	38	anti-parallel
Strand 4	D	95	96	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	163	166	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	3	first strand
Strand 2	E	12	13	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	186	189	parallel
Strand 3	E	146	150	parallel
Strand 4	E	167	171	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	85	90	anti-parallel
Strand 3	F	30	37	anti-parallel
Strand 4	F	151	157	anti-parallel
Strand 5	F	127	131	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	76	first strand
Strand 2	J	85	88	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	10	first strand
Strand 2	K	18	21	anti-parallel
Strand 3	K	38	43	anti-parallel
Strand 4	K	58	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	6	10	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	P	67	74	anti-parallel
Strand 4	P	55	64	anti-parallel
Strand 5	P	37	52	anti-parallel
Strand 6	P	24	32	anti-parallel
Strand 7	P	80	87	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	90	first strand
Strand 2	L	121	123	parallel
Strand 3	L	141	143	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	36	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	52	first strand
Strand 2	O	35	40	anti-parallel
Strand 3	O	25	30	anti-parallel
Strand 4	O	91	93	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	15	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	40	42	anti-parallel
Strand 4	R	46	48	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	23	first strand
Strand 2	R	92	102	anti-parallel
Strand 3	R	58	68	anti-parallel
Strand 4	R	32	34	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	78	first strand
Strand 2	R	83	89	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	29	34	anti-parallel
Strand 3	T	80	86	anti-parallel
Strand 4	T	58	63	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	63	65	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	21	27	anti-parallel
Strand 4	U	9	12	anti-parallel
Strand 5	U	69	73	anti-parallel
Strand 6	U	78	79	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	45	first strand
Strand 2	U	56	61	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	85	first strand
Strand 2	U	92	95	anti-parallel
Strand 3	U	100	101	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	7	8	first strand
Strand 2	V	38	43	anti-parallel
Strand 3	V	25	31	anti-parallel
Strand 4	V	86	92	parallel
Strand 5	V	68	79	anti-parallel
Strand 6	V	61	65	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	18	19	first strand
Strand 2	W	32	35	anti-parallel
Strand 3	W	54	57	anti-parallel
Strand 4	W	47	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	26	27	first strand
Strand 2	W	61	68	anti-parallel
Strand 3	W	73	80	anti-parallel
Strand 4	W	41	43	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	12	15	first strand
Strand 2	X	25	28	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	33	39	first strand
Strand 2	X	44	50	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	38	first strand
Strand 2	Z	3	8	anti-parallel
Strand 3	Z	54	57	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	19	first strand
Strand 2	G	22	26	anti-parallel
Strand 3	G	31	35	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	42	first strand
Strand 2	G	51	53	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	126	first strand
Strand 2	G	129	134	anti-parallel
Strand 3	G	82	89	anti-parallel
Strand 4	G	160	163	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	98	first strand
Strand 2	G	101	105	anti-parallel
Strand 3	G	112	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H3P