Analysis of interatomic Contacts of Structural Units in PDB entry:
9H40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H40 entry

There are 2 chains in PDB entry 9H40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 552
C
 MET 1LYS 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9H40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
61 75Right-handed alpha
Helix 5
AA5
A
128 139Right-handed alpha
Helix 6
AA6
A
154 161Right-handed alpha
Helix 7
AA7
A
168 173Right-handed alpha
Helix 8
AA8
A
194 198Right-handed 310
Helix 9
AA9
A
215 220Right-handed 310
Helix 10
AB1
A
250 252Right-handed 310
Helix 11
AB2
A
253 267Right-handed alpha
Helix 12
AB3
A
285 296Right-handed alpha
Helix 13
AB4
A
301 310Right-handed alpha
Helix 14
AB5
A
313 315Right-handed 310
Helix 15
AB6
A
316 324Right-handed alpha
Helix 16
AB7
A
338 357Right-handed alpha
Helix 17
AB8
A
373 380Right-handed alpha
Helix 18
AB9
A
382 387Right-handed 310
Helix 19
AC1
A
391 395Right-handed 310
Helix 20
AC2
A
421 439Right-handed alpha
Helix 21
AC3
A
469 490Right-handed alpha
Helix 22
AC4
A
498 508Right-handed alpha
Helix 23
AC5
A
510 528Right-handed alpha
Helix 24
AC6
A
536 540Right-handed 310
Helix 25
AC7
A
542 544Right-handed 310
Helix 26
AC8
A
545 550Right-handed alpha
Helix 27
AC9
C
7 23Right-handed alpha
Helix 28
AD1
C
30 35Right-handed alpha
Helix 29
AD2
C
36 38Right-handed 310
Helix 30
AD3
C
61 76Right-handed alpha
Helix 31
AD4
C
128 139Right-handed alpha
Helix 32
AD5
C
154 161Right-handed alpha
Helix 33
AD6
C
168 173Right-handed alpha
Helix 34
AD7
C
194 198Right-handed 310
Helix 35
AD8
C
215 220Right-handed 310
Helix 36
AD9
C
250 252Right-handed 310
Helix 37
AE1
C
253 267Right-handed alpha
Helix 38
AE2
C
288 293Right-handed alpha
Helix 39
AE3
C
301 310Right-handed alpha
Helix 40
AE4
C
313 316Right-handed 310
Helix 41
AE5
C
317 325Right-handed alpha
Helix 42
AE6
C
338 357Right-handed alpha
Helix 43
AE7
C
373 378Right-handed alpha
Helix 44
AE8
C
382 387Right-handed 310
Helix 45
AE9
C
421 439Right-handed alpha
Helix 46
AF1
C
469 490Right-handed alpha
Helix 47
AF2
C
498 509Right-handed alpha
Helix 48
AF3
C
510 528Right-handed alpha
Helix 49
AF4
C
536 540Right-handed 310
Helix 50
AF5
C
542 550Right-handed alpha
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There are 12 sheets in PDB entry 9H40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
100 104parallel
Strand 4
A
79 82parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
120 123anti-parallel
Strand 3
A
226 233anti-parallel
Strand 4
A
178 184anti-parallel
Strand 5
A
190 192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
235 236anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
329 337anti-parallel
Strand 3
A
240 248anti-parallel
Strand 4
A
361 369anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
462 465anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
416 419anti-parallel
Strand 3
A
493 494anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 28first strand
Strand 2
C
55 57anti-parallel
Strand 3
C
101 104parallel
Strand 4
C
79 82parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 115first strand
Strand 2
C
120 123anti-parallel
Strand 3
C
226 233anti-parallel
Strand 4
C
178 184anti-parallel
Strand 5
C
190 192anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
235 236anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 277first strand
Strand 2
C
329 337anti-parallel
Strand 3
C
240 248anti-parallel
Strand 4
C
361 369anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
411 414first strand
Strand 2
C
462 465anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 459first strand
Strand 2
C
416 419anti-parallel
Strand 3
C
493 494anti-parallel
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