Analysis of interatomic Contacts of Structural Units in PDB entry:
9H4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H4F entry

There are 2 chains in PDB entry 9H4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ALA 297
B
 PRO 9THR 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9H4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
74 90Right-handed alpha
Helix 5
AA5
A
101 115Right-handed alpha
Helix 6
AA6
A
127 131Right-handed 310
Helix 7
AA7
A
143 156Right-handed alpha
Helix 8
AA8
A
168 200Right-handed alpha
Helix 9
AA9
A
203 231Right-handed alpha
Helix 10
AB1
A
240 259Right-handed alpha
Helix 11
AB2
A
262 279Right-handed alpha
Helix 12
AB3
A
284 286Right-handed 310
Helix 13
AB4
A
287 294Right-handed alpha
Helix 14
AB5
B
17 29Right-handed alpha
Helix 15
AB6
B
45 50Right-handed alpha
Helix 16
AB7
B
57 64Right-handed alpha
Helix 17
AB8
B
74 90Right-handed alpha
Helix 18
AB9
B
101 114Right-handed alpha
Helix 19
AC1
B
127 131Right-handed 310
Helix 20
AC2
B
143 156Right-handed alpha
Helix 21
AC3
B
168 200Right-handed alpha
Helix 22
AC4
B
203 231Right-handed alpha
Helix 23
AC5
B
240 259Right-handed alpha
Helix 24
AC6
B
262 278Right-handed alpha
Helix 25
AC7
B
284 286Right-handed 310
Helix 26
AC8
B
287 293Right-handed alpha
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There are 4 sheets in PDB entry 9H4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
34 37parallel
Strand 3
A
11 14parallel
Strand 4
A
67 70parallel
Strand 5
A
93 96parallel
Strand 6
A
119 121parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
161 165parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
67 70parallel
Strand 3
B
93 96parallel
Strand 4
B
119 125parallel
Strand 5
B
137 141anti-parallel
Strand 6
B
161 164parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
53 54parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il