Analysis of interatomic Contacts of Structural Units in PDB entry:
9H4Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H4Q entry

There are 9 chains in PDB entry 9H4Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 8	LEU 543
a	ASN 5	GLN 310
c	ALA 10	ALA 328
T	GLY 7	SER 615
h	GLU 3	TRP 1146
X	ALA 101	THR 1578
R	LYS 45	PHE 184
U	ILE 9	GLN 75
Y	MET 3	GLY 162

There are115 helices in PDB entry 9H4Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	341	348	Right-handed alpha
Helix 2	AA2	C	392	397	Right-handed alpha
Helix 3	AA3	C	401	408	Right-handed alpha
Helix 4	AA4	C	429	441	Right-handed alpha
Helix 5	AA5	C	503	522	Right-handed alpha
Helix 6	AA6	C	529	538	Right-handed alpha
Helix 7	AA7	a	18	27	Right-handed alpha
Helix 8	AA8	a	32	36	Right-handed 310
Helix 9	AA9	a	65	73	Right-handed alpha
Helix 10	AB1	a	76	81	Right-handed alpha
Helix 11	AB2	a	97	116	Right-handed alpha
Helix 12	AB3	a	132	134	Right-handed 310
Helix 13	AB4	a	135	152	Right-handed alpha
Helix 14	AB5	a	169	181	Right-handed alpha
Helix 15	AB6	a	185	201	Right-handed alpha
Helix 16	AB7	a	241	258	Right-handed alpha
Helix 17	AB8	a	259	261	Right-handed 310
Helix 18	AB9	a	294	305	Right-handed alpha
Helix 19	AC1	c	21	32	Right-handed alpha
Helix 20	AC2	c	76	82	Right-handed alpha
Helix 21	AC3	c	96	114	Right-handed alpha
Helix 22	AC4	c	130	152	Right-handed alpha
Helix 23	AC5	c	169	181	Right-handed alpha
Helix 24	AC6	c	185	199	Right-handed alpha
Helix 25	AC7	c	224	245	Right-handed alpha
Helix 26	AC8	c	302	324	Right-handed alpha
Helix 27	AC9	T	34	40	Right-handed alpha
Helix 28	AD1	T	46	51	Right-handed alpha
Helix 29	AD2	T	82	84	Right-handed 310
Helix 30	AD3	T	104	123	Right-handed alpha
Helix 31	AD4	T	126	130	Right-handed 310
Helix 32	AD5	T	131	135	Right-handed 310
Helix 33	AD6	T	196	211	Right-handed alpha
Helix 34	AD7	T	260	267	Right-handed alpha
Helix 35	AD8	T	268	270	Right-handed 310
Helix 36	AD9	T	275	283	Right-handed alpha
Helix 37	AE1	T	286	300	Right-handed alpha
Helix 38	AE2	T	322	327	Right-handed alpha
Helix 39	AE3	T	330	338	Right-handed alpha
Helix 40	AE4	T	344	349	Right-handed 310
Helix 41	AE5	T	434	443	Right-handed alpha
Helix 42	AE6	T	450	458	Right-handed alpha
Helix 43	AE7	T	460	465	Right-handed alpha
Helix 44	AE8	T	468	479	Right-handed alpha
Helix 45	AE9	T	569	582	Right-handed alpha
Helix 46	AF1	T	585	594	Right-handed alpha
Helix 47	AF2	T	596	608	Right-handed alpha
Helix 48	AF3	h	33	39	Right-handed alpha
Helix 49	AF4	h	367	377	Right-handed alpha
Helix 50	AF5	h	383	391	Right-handed 310
Helix 51	AF6	h	402	409	Right-handed alpha
Helix 52	AF7	h	521	530	Right-handed alpha
Helix 53	AF8	h	545	557	Right-handed alpha
Helix 54	AF9	h	557	572	Right-handed alpha
Helix 55	AG1	h	574	591	Right-handed alpha
Helix 56	AG2	h	594	599	Right-handed alpha
Helix 57	AG3	h	601	617	Right-handed alpha
Helix 58	AG4	h	618	632	Right-handed alpha
Helix 59	AG5	h	678	685	Right-handed alpha
Helix 60	AG6	h	743	747	Right-handed 310
Helix 61	AG7	h	754	763	Right-handed alpha
Helix 62	AG8	h	771	782	Right-handed alpha
Helix 63	AG9	h	788	791	Right-handed 310
Helix 64	AH1	h	792	800	Right-handed alpha
Helix 65	AH2	h	815	831	Right-handed alpha
Helix 66	AH3	h	889	902	Right-handed alpha
Helix 67	AH4	h	907	917	Right-handed alpha
Helix 68	AH5	h	922	926	Right-handed 310
Helix 69	AH6	h	932	947	Right-handed alpha
Helix 70	AH7	h	961	974	Right-handed alpha
Helix 71	AH8	h	1080	1090	Right-handed alpha
Helix 72	AH9	h	1095	1105	Right-handed alpha
Helix 73	AI1	h	1114	1123	Right-handed alpha
Helix 74	AI2	h	1125	1136	Right-handed alpha
Helix 75	AI3	X	160	166	Right-handed alpha
Helix 76	AI4	X	177	184	Right-handed alpha
Helix 77	AI5	X	217	228	Right-handed alpha
Helix 78	AI6	X	298	306	Right-handed alpha
Helix 79	AI7	X	307	318	Right-handed alpha
Helix 80	AI8	X	338	342	Right-handed 310
Helix 81	AI9	X	366	380	Right-handed alpha
Helix 82	AJ1	X	380	386	Right-handed alpha
Helix 83	AJ2	X	408	417	Right-handed alpha
Helix 84	AJ3	X	449	461	Right-handed alpha
Helix 85	AJ4	X	522	527	Right-handed alpha
Helix 86	AJ5	X	532	536	Right-handed 310
Helix 87	AJ6	X	552	563	Right-handed alpha
Helix 88	AJ7	X	861	866	Right-handed 310
Helix 89	AJ8	X	871	875	Right-handed 310
Helix 90	AJ9	X	885	891	Right-handed alpha
Helix 91	AK1	X	904	909	Right-handed alpha
Helix 92	AK2	X	924	928	Right-handed 310
Helix 93	AK3	X	931	944	Right-handed alpha
Helix 94	AK4	X	953	962	Right-handed alpha
Helix 95	AK5	X	1053	1062	Right-handed alpha
Helix 96	AK6	X	1107	1123	Right-handed alpha
Helix 97	AK7	X	1127	1133	Right-handed alpha
Helix 98	AK8	X	1151	1157	Right-handed alpha
Helix 99	AK9	X	1389	1405	Right-handed alpha
Helix 100	AL1	X	1416	1420	Right-handed 310
Helix 101	AL2	X	1446	1453	Right-handed alpha
Helix 102	AL3	X	1455	1465	Right-handed alpha
Helix 103	AL4	X	1522	1529	Right-handed alpha
Helix 104	AL5	X	1549	1561	Right-handed alpha
Helix 105	AL6	X	1561	1578	Right-handed alpha
Helix 106	AL7	R	46	69	Right-handed alpha
Helix 107	AL8	R	73	79	Right-handed alpha
Helix 108	AL9	R	87	100	Right-handed alpha
Helix 109	AM1	R	154	172	Right-handed alpha
Helix 110	AM2	U	26	33	Right-handed 310
Helix 111	AM3	U	34	39	Right-handed alpha
Helix 112	AM4	Y	5	16	Right-handed alpha
Helix 113	AM5	Y	63	85	Right-handed alpha
Helix 114	AM6	Y	138	152	Right-handed alpha
Helix 115	AM7	Y	153	157	Right-handed 310

There are 45 sheets in PDB entry 9H4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	310	first strand
Strand 2	C	325	330	anti-parallel
Strand 3	C	335	339	anti-parallel
Strand 4	C	19	20	anti-parallel
Strand 5	C	411	412	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	46	51	anti-parallel
Strand 4	C	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	84	89	anti-parallel
Strand 3	C	92	97	anti-parallel
Strand 4	C	106	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	122	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	152	155	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	173	178	anti-parallel
Strand 3	C	181	186	anti-parallel
Strand 4	C	195	197	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	209	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	240	243	anti-parallel
Strand 5	C	288	290	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	273	276	anti-parallel
Strand 4	C	295	296	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	450	first strand
Strand 2	C	455	462	anti-parallel
Strand 3	C	473	475	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	450	first strand
Strand 2	C	455	462	anti-parallel
Strand 3	C	478	480	anti-parallel
Strand 4	C	493	495	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	45	51	first strand
Strand 2	a	55	61	anti-parallel
Strand 3	a	6	13	parallel
Strand 4	a	86	92	parallel
Strand 5	a	120	126	parallel
Strand 6	a	160	163	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	215	218	first strand
Strand 2	a	202	208	anti-parallel
Strand 3	a	284	288	anti-parallel
Strand 4	a	273	276	anti-parallel
Strand 5	a	264	269	anti-parallel
Strand 6	c	270	275	anti-parallel
Strand 7	c	280	285	anti-parallel
Strand 8	c	290	296	anti-parallel
Strand 9	c	202	209	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	61	64	first strand
Strand 2	c	11	16	parallel
Strand 3	c	83	91	parallel
Strand 4	c	118	124	parallel
Strand 5	c	159	163	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	24	31	first strand
Strand 2	T	13	20	anti-parallel
Strand 3	T	86	96	anti-parallel
Strand 4	T	68	72	anti-parallel
Strand 5	T	61	65	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	24	31	first strand
Strand 2	T	13	20	anti-parallel
Strand 3	T	86	96	anti-parallel
Strand 4	T	75	78	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	213	217	first strand
Strand 2	T	223	227	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	243	245	first strand
Strand 2	T	305	307	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	316	317	first strand
Strand 2	T	482	483	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	486	491	first strand
Strand 2	T	610	615	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	22	28	first strand
Strand 2	h	10	19	anti-parallel
Strand 3	h	532	539	anti-parallel
Strand 4	h	428	430	anti-parallel
Strand 5	h	422	423	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	22	28	first strand
Strand 2	h	10	19	anti-parallel
Strand 3	h	532	539	anti-parallel
Strand 4	h	434	435	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	396	397	first strand
Strand 2	h	400	401	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	636	640	first strand
Strand 2	h	644	648	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	655	656	first strand
Strand 2	h	672	673	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	748	751	first strand
Strand 2	h	834	837	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	846	848	first strand
Strand 2	h	949	951	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	1071	1073	first strand
Strand 2	h	953	960	anti-parallel
Strand 3	h	1140	1145	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	118	120	first strand
Strand 2	X	172	175	anti-parallel
Strand 3	X	102	109	parallel
Strand 4	X	190	193	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	133	135	first strand
Strand 2	X	153	155	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	257	259	first strand
Strand 2	X	252	254	anti-parallel
Strand 3	X	206	207	anti-parallel
Strand 4	X	269	270	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	231	234	first strand
Strand 2	X	261	264	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	240	241	first strand
Strand 2	X	245	246	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	400	401	first strand
Strand 2	X	326	333	anti-parallel
Strand 3	X	278	285	parallel
Strand 4	X	434	440	parallel
Strand 5	X	467	471	parallel
Strand 6	X	500	504	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	400	401	first strand
Strand 2	X	326	333	anti-parallel
Strand 3	X	351	357	anti-parallel
Strand 4	X	1028	1030	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	323	324	first strand
Strand 2	X	362	363	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	387	389	first strand
Strand 2	X	395	397	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	445	447	first strand
Strand 2	X	482	486	parallel
Strand 3	X	492	497	anti-parallel
Strand 4	X	848	851	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	898	899	first strand
Strand 2	X	949	951	parallel
Strand 3	X	985	989	anti-parallel
Strand 4	X	993	998	anti-parallel
Strand 5	X	1005	1011	anti-parallel
Strand 6	X	917	919	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1344	1348	first strand
Strand 2	X	1364	1368	anti-parallel
Strand 3	X	1377	1383	anti-parallel
Strand 4	X	1076	1082	anti-parallel
Strand 5	X	1409	1412	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1146	1147	first strand
Strand 2	X	1370	1371	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1341	1342	first strand
Strand 2	X	1486	1487	parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1430	1432	first strand
Strand 2	X	1517	1521	anti-parallel
Strand 3	X	1507	1511	anti-parallel
Strand 4	X	1498	1502	anti-parallel
Strand 5	X	1467	1469	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	83	84	first strand
Strand 2	Y	107	112	anti-parallel
Strand 3	Y	115	121	anti-parallel
Strand 4	Y	127	134	anti-parallel
Strand 5	Y	34	39	anti-parallel
Strand 6	Y	45	50	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	142	143	first strand
Strand 2	U	49	53	anti-parallel
Strand 3	U	56	63	anti-parallel
Strand 4	U	66	73	anti-parallel
Strand 5	U	11	16	anti-parallel
Strand 6	U	21	24	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	21	22	first strand
Strand 2	Y	27	28	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	99	100	first strand
Strand 2	Y	103	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H4Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H4Q