Analysis of interatomic Contacts of Structural Units in PDB entry:
9H4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H4R entry

There are 6 chains in PDB entry 9H4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 41ALA 136
H
 GLN 20SER 139
L
 GLU 18ILE 132
B
 ASN 42ILE 137
X
 GLN 20SER 139
Y
 THR 19ARG 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9H4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 70Right-handed alpha
Helix 2
AA2
A
99 103Right-handed alpha
Helix 3
AA3
H
47 51Right-handed 310
Helix 4
AA4
H
81 84Right-handed 310
Helix 5
AA5
H
106 110Right-handed 310
Helix 6
AA6
L
105 109Right-handed 310
Helix 7
AA7
B
62 70Right-handed alpha
Helix 8
AA8
B
99 103Right-handed alpha
Helix 9
AA9
X
47 51Right-handed 310
Helix 10
AB1
X
81 84Right-handed 310
Helix 11
AB2
X
106 110Right-handed 310
Helix 12
AB3
Y
105 109Right-handed 310
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There are 19 sheets in PDB entry 9H4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
94 98anti-parallel
Strand 4
A
87 89anti-parallel
Strand 5
B
87 89anti-parallel
Strand 6
B
94 98anti-parallel
Strand 7
B
55 59anti-parallel
Strand 8
B
48 51anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
109 116anti-parallel
Strand 3
A
104 106anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
109 116anti-parallel
Strand 3
A
128 135anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 25first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
133 137parallel
Strand 3
H
111 118anti-parallel
Strand 4
H
52 58anti-parallel
Strand 5
H
64 71anti-parallel
Strand 6
H
76 79anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
133 137parallel
Strand 3
H
111 118anti-parallel
Strand 4
H
126 129anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
24 27first strand
Strand 2
L
39 45anti-parallel
Strand 3
L
96 101anti-parallel
Strand 4
L
88 92anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 32first strand
Strand 2
L
128 131parallel
Strand 3
L
111 116anti-parallel
Strand 4
L
59 64anti-parallel
Strand 5
L
71 75anti-parallel
Strand 6
L
79 80anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 32first strand
Strand 2
L
128 131parallel
Strand 3
L
111 116anti-parallel
Strand 4
L
123 124anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
50 51first strand
Strand 2
L
56 57anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
109 116anti-parallel
Strand 3
B
104 106anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
109 116anti-parallel
Strand 3
B
128 135anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
22 25first strand
Strand 2
X
37 44anti-parallel
Strand 3
X
97 102anti-parallel
Strand 4
X
87 92anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
29 31first strand
Strand 2
X
133 137parallel
Strand 3
X
111 118anti-parallel
Strand 4
X
52 58anti-parallel
Strand 5
X
64 71anti-parallel
Strand 6
X
76 79anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
29 31first strand
Strand 2
X
133 137parallel
Strand 3
X
111 118anti-parallel
Strand 4
X
126 129anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
24 27first strand
Strand 2
Y
39 45anti-parallel
Strand 3
Y
96 101anti-parallel
Strand 4
Y
88 93anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
30 33first strand
Strand 2
Y
128 132parallel
Strand 3
Y
110 116anti-parallel
Strand 4
Y
59 64anti-parallel
Strand 5
Y
70 75anti-parallel
Strand 6
Y
79 80anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
30 33first strand
Strand 2
Y
128 132parallel
Strand 3
Y
110 116anti-parallel
Strand 4
Y
123 124anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
50 51first strand
Strand 2
Y
56 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il