Analysis of interatomic Contacts of Structural Units in PDB entry:
9H4T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H4T entry

There are 2 chains in PDB entry 9H4T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 49	CYS 838
B	SER 49	ALA 843

There are 68 helices in PDB entry 9H4T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	88	Right-handed 310
Helix 2	AA2	A	89	95	Right-handed alpha
Helix 3	AA3	A	107	113	Right-handed alpha
Helix 4	AA4	A	114	116	Right-handed 310
Helix 5	AA5	A	117	121	Right-handed 310
Helix 6	AA6	A	130	149	Right-handed alpha
Helix 7	AA7	A	150	152	Right-handed 310
Helix 8	AA8	A	168	179	Right-handed alpha
Helix 9	AA9	A	194	204	Right-handed alpha
Helix 10	AB1	A	214	222	Right-handed alpha
Helix 11	AB2	A	231	236	Right-handed alpha
Helix 12	AB3	A	246	260	Right-handed alpha
Helix 13	AB4	A	273	280	Right-handed alpha
Helix 14	AB5	A	293	308	Right-handed alpha
Helix 15	AB6	A	312	319	Right-handed alpha
Helix 16	AB7	A	322	331	Right-handed alpha
Helix 17	AB8	A	340	349	Right-handed alpha
Helix 18	AB9	A	351	365	Right-handed alpha
Helix 19	AC1	A	373	377	Right-handed 310
Helix 20	AC2	A	380	396	Right-handed alpha
Helix 21	AC3	A	453	460	Right-handed alpha
Helix 22	AC4	A	486	491	Right-handed alpha
Helix 23	AC5	A	493	502	Right-handed alpha
Helix 24	AC6	A	515	520	Right-handed alpha
Helix 25	AC7	A	529	533	Right-handed 310
Helix 26	AC8	A	562	573	Right-handed alpha
Helix 27	AC9	A	576	582	Right-handed alpha
Helix 28	AD1	A	585	602	Right-handed alpha
Helix 29	AD2	A	610	618	Right-handed alpha
Helix 30	AD3	A	632	638	Right-handed alpha
Helix 31	AD4	A	655	660	Right-handed alpha
Helix 32	AD5	A	708	713	Right-handed alpha
Helix 33	AD6	A	726	733	Right-handed alpha
Helix 34	AD7	A	789	793	Right-handed 310
Helix 35	AD8	B	84	88	Right-handed 310
Helix 36	AD9	B	89	95	Right-handed alpha
Helix 37	AE1	B	107	113	Right-handed alpha
Helix 38	AE2	B	114	116	Right-handed 310
Helix 39	AE3	B	117	121	Right-handed 310
Helix 40	AE4	B	130	149	Right-handed alpha
Helix 41	AE5	B	150	152	Right-handed 310
Helix 42	AE6	B	168	179	Right-handed alpha
Helix 43	AE7	B	194	204	Right-handed alpha
Helix 44	AE8	B	214	220	Right-handed alpha
Helix 45	AE9	B	231	236	Right-handed alpha
Helix 46	AF1	B	246	260	Right-handed alpha
Helix 47	AF2	B	273	280	Right-handed alpha
Helix 48	AF3	B	293	308	Right-handed alpha
Helix 49	AF4	B	312	319	Right-handed alpha
Helix 50	AF5	B	322	332	Right-handed alpha
Helix 51	AF6	B	340	349	Right-handed alpha
Helix 52	AF7	B	351	365	Right-handed alpha
Helix 53	AF8	B	373	377	Right-handed 310
Helix 54	AF9	B	380	396	Right-handed alpha
Helix 55	AG1	B	453	460	Right-handed alpha
Helix 56	AG2	B	486	491	Right-handed alpha
Helix 57	AG3	B	493	502	Right-handed alpha
Helix 58	AG4	B	515	520	Right-handed alpha
Helix 59	AG5	B	529	533	Right-handed 310
Helix 60	AG6	B	562	573	Right-handed alpha
Helix 61	AG7	B	576	582	Right-handed alpha
Helix 62	AG8	B	585	605	Right-handed alpha
Helix 63	AG9	B	610	618	Right-handed alpha
Helix 64	AH1	B	632	638	Right-handed alpha
Helix 65	AH2	B	655	660	Right-handed alpha
Helix 66	AH3	B	708	713	Right-handed alpha
Helix 67	AH4	B	726	733	Right-handed alpha
Helix 68	AH5	B	789	793	Right-handed 310

There are 17 sheets in PDB entry 9H4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	60	67	anti-parallel
Strand 3	A	70	76	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	479	483	parallel
Strand 3	A	506	511	parallel
Strand 4	A	523	526	parallel
Strand 5	A	104	106	anti-parallel
Strand 6	A	125	128	anti-parallel
Strand 7	A	832	834	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	448	450	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	264	268	parallel
Strand 3	A	224	228	parallel
Strand 4	A	367	371	parallel
Strand 5	A	404	406	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	651	652	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	470	473	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	539	first strand
Strand 2	A	546	550	anti-parallel
Strand 3	A	620	622	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	693	first strand
Strand 2	A	764	766	parallel
Strand 3	A	722	725	anti-parallel
Strand 4	A	749	756	parallel
Strand 5	A	740	744	anti-parallel
Strand 6	A	812	817	anti-parallel
Strand 7	A	690	693	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	70	76	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	479	483	parallel
Strand 3	B	506	511	parallel
Strand 4	B	523	526	parallel
Strand 5	B	104	106	anti-parallel
Strand 6	B	125	128	anti-parallel
Strand 7	B	832	834	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	448	450	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	264	268	parallel
Strand 3	B	224	228	parallel
Strand 4	B	367	371	parallel
Strand 5	B	404	406	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	651	652	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	624	627	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	470	473	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	539	first strand
Strand 2	B	546	550	anti-parallel
Strand 3	B	620	622	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	693	first strand
Strand 2	B	764	766	parallel
Strand 3	B	722	725	anti-parallel
Strand 4	B	749	756	parallel
Strand 5	B	740	744	anti-parallel
Strand 6	B	812	817	anti-parallel
Strand 7	B	690	693	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H4T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H4T