Analysis of interatomic Contacts of Structural Units in PDB entry:
9H5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H5W entry

There are 2 chains in PDB entry 9H5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3GLU 418
B
 ILE 4GLN 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9H5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
84 86Right-handed 310
Helix 5
AA5
A
87 99Right-handed alpha
Helix 6
AA6
A
105 118Right-handed alpha
Helix 7
AA7
A
126 139Right-handed alpha
Helix 8
AA8
A
142 147Right-handed 310
Helix 9
AA9
A
160 167Right-handed alpha
Helix 10
AB1
A
168 170Right-handed 310
Helix 11
AB2
A
179 189Right-handed alpha
Helix 12
AB3
A
245 257Right-handed alpha
Helix 13
AB4
A
273 279Right-handed alpha
Helix 14
AB5
A
309 311Right-handed 310
Helix 15
AB6
A
312 328Right-handed alpha
Helix 16
AB7
A
331 343Right-handed alpha
Helix 17
AB8
A
355 367Right-handed alpha
Helix 18
AB9
A
373 382Right-handed alpha
Helix 19
AC1
A
384 397Right-handed alpha
Helix 20
AC2
A
409 416Right-handed alpha
Helix 21
AC3
B
40 44Right-handed 310
Helix 22
AC4
B
50 60Right-handed alpha
Helix 23
AC5
B
67 79Right-handed alpha
Helix 24
AC6
B
101 115Right-handed alpha
Helix 25
AC7
B
119 138Right-handed alpha
Helix 26
AC8
B
140 154Right-handed alpha
Helix 27
AC9
B
156 160Right-handed 310
Helix 28
AD1
B
165 172Right-handed alpha
Helix 29
AD2
B
173 185Right-handed alpha
Helix 30
AD3
B
186 188Right-handed 310
Helix 31
AD4
B
199 211Right-handed alpha
Helix 32
AD5
B
226 230Right-handed 310
Helix 33
AD6
B
244 247Right-handed 310
Helix 34
AD7
B
265 277Right-handed alpha
Helix 35
AD8
B
316 318Right-handed 310
Helix 36
AD9
B
319 336Right-handed alpha
Helix 37
AE1
B
339 359Right-handed alpha
Helix 38
AE2
B
361 376Right-handed alpha
Helix 39
AE3
B
381 392Right-handed alpha
Helix 40
AE4
B
393 405Right-handed alpha
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There are 5 sheets in PDB entry 9H5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
172 176parallel
Strand 4
A
24 30anti-parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
401 405parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
300 308anti-parallel
Strand 5
A
288 295anti-parallel
Strand 6
A
258 260anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
222 223anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
190 196parallel
Strand 4
B
30 37anti-parallel
Strand 5
B
91 98anti-parallel
Strand 6
B
82 86anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 242first strand
Strand 2
B
411 416parallel
Strand 3
B
250 257anti-parallel
Strand 4
B
306 315anti-parallel
Strand 5
B
297 303anti-parallel
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