Analysis of interatomic Contacts of Structural Units in PDB entry:
9H68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H68 entry

There are 4 chains in PDB entry 9H68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU -7	ALA 417
D	GLY -1	ARG 415
B	LEU -5	ARG 415
C	GLY -1	THR 38

There are 38 helices in PDB entry 9H68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	185	197	Right-handed alpha
Helix 3	AA3	A	202	223	Right-handed alpha
Helix 4	AA4	A	253	263	Right-handed alpha
Helix 5	AA5	A	295	304	Right-handed alpha
Helix 6	AA6	A	307	317	Right-handed alpha
Helix 7	AA7	A	346	363	Right-handed alpha
Helix 8	AA8	A	376	390	Right-handed alpha
Helix 9	AA9	A	399	414	Right-handed alpha
Helix 10	AB1	D	61	65	Right-handed 310
Helix 11	AB2	D	185	197	Right-handed alpha
Helix 12	AB3	D	202	223	Right-handed alpha
Helix 13	AB4	D	253	263	Right-handed alpha
Helix 14	AB5	D	295	304	Right-handed alpha
Helix 15	AB6	D	307	317	Right-handed alpha
Helix 16	AB7	D	346	360	Right-handed alpha
Helix 17	AB8	D	376	391	Right-handed alpha
Helix 18	AB9	D	399	415	Right-handed alpha
Helix 19	AC1	B	61	65	Right-handed 310
Helix 20	AC2	B	185	197	Right-handed alpha
Helix 21	AC3	B	202	223	Right-handed alpha
Helix 22	AC4	B	226	230	Right-handed 310
Helix 23	AC5	B	253	263	Right-handed alpha
Helix 24	AC6	B	295	304	Right-handed alpha
Helix 25	AC7	B	307	317	Right-handed alpha
Helix 26	AC8	B	346	363	Right-handed alpha
Helix 27	AC9	B	376	391	Right-handed alpha
Helix 28	AD1	B	399	413	Right-handed alpha
Helix 29	AD2	C	61	65	Right-handed 310
Helix 30	AD3	C	185	197	Right-handed alpha
Helix 31	AD4	C	202	223	Right-handed alpha
Helix 32	AD5	C	224	229	Right-handed alpha
Helix 33	AD6	C	253	263	Right-handed alpha
Helix 34	AD7	C	295	305	Right-handed alpha
Helix 35	AD8	C	307	317	Right-handed alpha
Helix 36	AD9	C	346	360	Right-handed alpha
Helix 37	AE1	C	376	391	Right-handed alpha
Helix 38	AE2	C	399	415	Right-handed alpha

There are 19 sheets in PDB entry 9H68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	59	first strand
Strand 2	A	1	12	anti-parallel
Strand 3	A	100	107	parallel
Strand 4	A	251	252	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	74	81	anti-parallel
Strand 4	A	87	95	anti-parallel
Strand 5	A	121	126	parallel
Strand 6	D	121	126	anti-parallel
Strand 7	D	88	95	parallel
Strand 8	D	74	81	anti-parallel
Strand 9	D	23	28	anti-parallel
Strand 10	D	38	44	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	165	169	anti-parallel
Strand 3	A	235	236	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	321	324	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	293	294	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	59	first strand
Strand 2	D	1	12	anti-parallel
Strand 3	D	100	107	parallel
Strand 4	D	251	252	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	184	first strand
Strand 2	D	165	169	anti-parallel
Strand 3	D	235	236	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	266	first strand
Strand 2	D	323	324	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	293	294	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	59	first strand
Strand 2	B	1	12	anti-parallel
Strand 3	B	100	107	parallel
Strand 4	B	251	252	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	44	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	74	81	anti-parallel
Strand 4	B	87	95	anti-parallel
Strand 5	B	121	126	parallel
Strand 6	C	121	126	anti-parallel
Strand 7	C	88	95	parallel
Strand 8	C	74	81	anti-parallel
Strand 9	C	23	28	anti-parallel
Strand 10	C	38	44	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	184	first strand
Strand 2	B	165	169	anti-parallel
Strand 3	B	235	236	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	321	324	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	293	294	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	59	first strand
Strand 2	C	1	12	anti-parallel
Strand 3	C	100	109	parallel
Strand 4	C	85	86	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	59	first strand
Strand 2	C	1	12	anti-parallel
Strand 3	C	100	109	parallel
Strand 4	C	251	252	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	184	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	235	236	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	268	first strand
Strand 2	C	321	324	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	293	294	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H68

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H68