Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H6D entry

There are 4 chains in PDB entry 9H6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 132
B
 HIS 0GLY 68
C
 MET 1SER 132
D
 GLN -2GLY 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 9H6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
19 29Right-handed alpha
Helix 3
AA3
A
37 50Right-handed alpha
Helix 4
AA4
A
52 67Right-handed alpha
Helix 5
AA5
A
73 91Right-handed alpha
Helix 6
AA6
A
95 109Right-handed alpha
Helix 7
AA7
A
116 122Right-handed alpha
Helix 8
AA8
B
17 21Right-handed 310
Helix 9
AA9
B
47 52Right-handed alpha
Helix 10
AB1
C
7 18Right-handed alpha
Helix 11
AB2
C
19 29Right-handed alpha
Helix 12
AB3
C
37 50Right-handed alpha
Helix 13
AB4
C
52 67Right-handed alpha
Helix 14
AB5
C
73 91Right-handed alpha
Helix 15
AB6
C
95 109Right-handed alpha
Helix 16
AB7
C
116 122Right-handed alpha
Helix 17
AB8
D
46 53Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9H6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
33 36parallel
Strand 3
A
4 6parallel
Strand 4
A
111 113parallel
Strand 5
A
128 129parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
37 42anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
33 36parallel
Strand 3
C
4 6parallel
Strand 4
C
111 113parallel
Strand 5
C
127 129parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
11 14anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 34first strand
Strand 2
D
37 42anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il