Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H6F entry

There is 1 chain in PDB entry 9H6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 45	ARG 678

There are 54 helices in PDB entry 9H6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	68	Right-handed alpha
Helix 2	AA2	A	245	247	Right-handed 310
Helix 3	AA3	A	249	255	Right-handed alpha
Helix 4	AA4	A	261	263	Right-handed 310
Helix 5	AA5	A	287	302	Right-handed alpha
Helix 6	AA6	A	325	330	Right-handed alpha
Helix 7	AA7	A	331	333	Right-handed 310
Helix 8	AA8	A	334	343	Right-handed alpha
Helix 9	AA9	A	365	384	Right-handed alpha
Helix 10	AB1	A	394	400	Right-handed 310
Helix 11	AB2	A	401	408	Right-handed alpha
Helix 12	AB3	A	409	419	Right-handed alpha
Helix 13	AB4	A	434	448	Right-handed alpha
Helix 14	AB5	A	461	463	Right-handed 310
Helix 15	AB6	A	476	479	Right-handed 310
Helix 16	AB7	A	480	492	Right-handed alpha
Helix 17	AB8	A	501	506	Right-handed alpha
Helix 18	AB9	A	527	533	Right-handed alpha
Helix 19	AC1	A	533	543	Right-handed alpha
Helix 20	AC2	A	550	559	Right-handed alpha
Helix 21	AC3	A	570	576	Right-handed alpha
Helix 22	AC4	A	593	597	Right-handed 310
Helix 23	AC5	A	620	624	Right-handed 310
Helix 24	AC6	A	631	633	Right-handed 310
Helix 25	AC7	A	639	651	Right-handed alpha
Helix 26	AC8	A	811	813	Right-handed 310
Helix 27	AC9	A	824	828	Right-handed 310
Helix 28	AD1	B	47	68	Right-handed alpha
Helix 29	AD2	B	245	247	Right-handed 310
Helix 30	AD3	B	249	255	Right-handed alpha
Helix 31	AD4	B	261	263	Right-handed 310
Helix 32	AD5	B	287	302	Right-handed alpha
Helix 33	AD6	B	325	330	Right-handed alpha
Helix 34	AD7	B	331	333	Right-handed 310
Helix 35	AD8	B	334	343	Right-handed alpha
Helix 36	AD9	B	365	384	Right-handed alpha
Helix 37	AE1	B	394	400	Right-handed 310
Helix 38	AE2	B	401	408	Right-handed alpha
Helix 39	AE3	B	409	419	Right-handed alpha
Helix 40	AE4	B	434	448	Right-handed alpha
Helix 41	AE5	B	461	463	Right-handed 310
Helix 42	AE6	B	476	479	Right-handed 310
Helix 43	AE7	B	480	492	Right-handed alpha
Helix 44	AE8	B	501	506	Right-handed alpha
Helix 45	AE9	B	527	533	Right-handed alpha
Helix 46	AF1	B	533	543	Right-handed alpha
Helix 47	AF2	B	550	559	Right-handed alpha
Helix 48	AF3	B	570	576	Right-handed alpha
Helix 49	AF4	B	593	597	Right-handed 310
Helix 50	AF5	B	620	624	Right-handed 310
Helix 51	AF6	B	631	633	Right-handed 310
Helix 52	AF7	B	639	651	Right-handed alpha
Helix 53	AF8	B	811	813	Right-handed 310
Helix 54	AF9	B	824	828	Right-handed 310

There are 23 sheets in PDB entry 9H6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	78	first strand
Strand 2	A	83	88	anti-parallel
Strand 3	A	93	97	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	121	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	132	133	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	162	167	anti-parallel
Strand 3	A	170	176	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	208	211	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	243	first strand
Strand 2	A	265	270	parallel
Strand 3	A	305	311	parallel
Strand 4	A	346	351	parallel
Strand 5	A	387	391	parallel
Strand 6	A	423	428	parallel
Strand 7	A	453	459	parallel
Strand 8	A	495	500	parallel
Strand 9	A	237	243	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	514	first strand
Strand 2	A	520	526	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	560	563	parallel
Strand 3	A	626	629	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	657	first strand
Strand 2	A	678	683	anti-parallel
Strand 3	A	691	696	anti-parallel
Strand 4	A	725	732	anti-parallel
Strand 5	A	760	768	anti-parallel
Strand 6	A	749	757	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	664	first strand
Strand 2	A	667	671	anti-parallel
Strand 3	A	701	707	anti-parallel
Strand 4	A	710	716	anti-parallel
Strand 5	A	771	776	anti-parallel
Strand 6	A	739	744	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	809	first strand
Strand 2	A	930	938	anti-parallel
Strand 3	A	838	840	anti-parallel
Strand 4	A	820	822	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	809	first strand
Strand 2	A	930	938	anti-parallel
Strand 3	A	859	868	anti-parallel
Strand 4	A	902	910	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	816	first strand
Strand 2	A	848	855	anti-parallel
Strand 3	A	913	921	anti-parallel
Strand 4	A	877	881	anti-parallel
Strand 5	A	884	887	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	83	88	anti-parallel
Strand 3	B	71	78	anti-parallel
Strand 4	B	208	212	parallel
Strand 5	B	196	201	anti-parallel
Strand 6	B	186	192	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	121	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	132	133	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	162	167	anti-parallel
Strand 3	B	170	176	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	305	312	anti-parallel
Strand 3	B	346	352	parallel
Strand 4	B	387	391	parallel
Strand 5	B	423	428	parallel
Strand 6	B	453	459	parallel
Strand 7	B	495	500	parallel
Strand 8	B	237	243	parallel
Strand 9	B	265	270	parallel
Strand 10	B	305	312	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	514	first strand
Strand 2	B	520	526	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	560	563	parallel
Strand 3	B	626	629	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	657	first strand
Strand 2	B	678	683	anti-parallel
Strand 3	B	691	696	anti-parallel
Strand 4	B	725	732	anti-parallel
Strand 5	B	760	768	anti-parallel
Strand 6	B	749	756	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	664	first strand
Strand 2	B	667	671	anti-parallel
Strand 3	B	701	706	anti-parallel
Strand 4	B	711	716	anti-parallel
Strand 5	B	771	776	anti-parallel
Strand 6	B	739	744	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	806	809	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	838	840	anti-parallel
Strand 4	B	820	822	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	806	809	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	859	868	anti-parallel
Strand 4	B	902	910	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	816	first strand
Strand 2	B	848	855	anti-parallel
Strand 3	B	913	921	anti-parallel
Strand 4	B	877	881	anti-parallel
Strand 5	B	884	887	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6F