Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H6J entry

There are 2 chains in PDB entry 9H6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 53	GLN 533
B	ASP 53	GLN 533

There are 26 helices in PDB entry 9H6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	68	73	Right-handed alpha
Helix 3	AA3	A	103	106	Right-handed 310
Helix 4	AA4	A	107	130	Right-handed alpha
Helix 5	AA5	A	131	135	Right-handed 310
Helix 6	AA6	A	212	221	Right-handed alpha
Helix 7	AA7	A	274	278	Right-handed alpha
Helix 8	AA8	A	288	301	Right-handed alpha
Helix 9	AA9	A	335	346	Right-handed alpha
Helix 10	AB1	A	366	377	Right-handed alpha
Helix 11	AB2	A	443	450	Right-handed alpha
Helix 12	AB3	A	461	467	Right-handed alpha
Helix 13	AB4	A	512	526	Right-handed alpha
Helix 14	AB5	B	57	61	Right-handed 310
Helix 15	AB6	B	68	73	Right-handed alpha
Helix 16	AB7	B	103	106	Right-handed 310
Helix 17	AB8	B	107	130	Right-handed alpha
Helix 18	AB9	B	131	135	Right-handed 310
Helix 19	AC1	B	212	221	Right-handed alpha
Helix 20	AC2	B	274	278	Right-handed alpha
Helix 21	AC3	B	288	301	Right-handed alpha
Helix 22	AC4	B	335	346	Right-handed alpha
Helix 23	AC5	B	366	377	Right-handed alpha
Helix 24	AC6	B	443	450	Right-handed alpha
Helix 25	AC7	B	461	467	Right-handed alpha
Helix 26	AC8	B	512	526	Right-handed alpha

There are 13 sheets in PDB entry 9H6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	B	192	193	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	527	533	anti-parallel
Strand 3	A	411	417	parallel
Strand 4	A	398	403	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	166	167	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	B	137	139	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	245	254	parallel
Strand 3	A	233	242	anti-parallel
Strand 4	A	176	181	anti-parallel
Strand 5	A	205	210	anti-parallel
Strand 6	A	197	199	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	224	227	anti-parallel
Strand 3	A	185	188	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	308	312	parallel
Strand 3	A	279	285	parallel
Strand 4	A	351	354	parallel
Strand 5	A	439	442	anti-parallel
Strand 6	A	381	388	anti-parallel
Strand 7	A	473	483	parallel
Strand 8	A	393	394	first strand

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	473	483	anti-parallel
Strand 3	A	381	388	parallel
Strand 4	A	429	432	first strand
Strand 5	A	421	422	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	527	533	anti-parallel
Strand 3	B	411	417	parallel
Strand 4	B	398	403	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	245	254	parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	176	181	anti-parallel
Strand 5	B	205	210	anti-parallel
Strand 6	B	197	199	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	224	227	anti-parallel
Strand 3	B	185	188	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	308	312	parallel
Strand 3	B	279	285	parallel
Strand 4	B	351	354	parallel
Strand 5	B	439	442	anti-parallel
Strand 6	B	381	387	anti-parallel
Strand 7	B	473	483	parallel
Strand 8	B	393	394	first strand

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	473	483	anti-parallel
Strand 3	B	381	387	parallel
Strand 4	B	429	432	first strand
Strand 5	B	421	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6J