Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H6T entry

There are 8 chains in PDB entry 9H6T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 5	TYR 110
B	ALA 2	ILE 289
C	TRP 4	ILE 289
D	MET 6	GLU 100
E	T -5	G 0
F	G -20	A 5
G	G -24	C 20
H	C 4	C 24

There are 29 helices in PDB entry 9H6T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	35	Right-handed alpha
Helix 2	AA2	A	51	65	Right-handed alpha
Helix 3	AA3	B	52	61	Right-handed alpha
Helix 4	AA4	B	87	96	Right-handed alpha
Helix 5	AA5	B	98	124	Right-handed alpha
Helix 6	AA6	B	126	139	Right-handed alpha
Helix 7	AA7	B	147	162	Right-handed alpha
Helix 8	AA8	B	174	193	Right-handed alpha
Helix 9	AA9	B	212	218	Right-handed alpha
Helix 10	AB1	B	219	221	Right-handed 310
Helix 11	AB2	B	222	233	Right-handed alpha
Helix 12	AB3	B	237	246	Right-handed alpha
Helix 13	AB4	B	247	250	Right-handed 310
Helix 14	AB5	B	262	278	Right-handed alpha
Helix 15	AB6	C	52	59	Right-handed alpha
Helix 16	AB7	C	88	96	Right-handed alpha
Helix 17	AB8	C	98	124	Right-handed alpha
Helix 18	AB9	C	126	139	Right-handed alpha
Helix 19	AC1	C	147	161	Right-handed alpha
Helix 20	AC2	C	171	196	Right-handed alpha
Helix 21	AC3	C	212	220	Right-handed alpha
Helix 22	AC4	C	222	233	Right-handed alpha
Helix 23	AC5	C	237	245	Right-handed alpha
Helix 24	AC6	C	246	251	Right-handed alpha
Helix 25	AC7	C	262	278	Right-handed alpha
Helix 26	AC8	D	18	36	Right-handed alpha
Helix 27	AC9	D	51	65	Right-handed alpha
Helix 28	AD1	D	79	83	Right-handed 310
Helix 29	AD2	D	95	99	Right-handed 310

There are 8 sheets in PDB entry 9H6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	44	49	anti-parallel
Strand 3	A	6	13	anti-parallel
Strand 4	A	71	78	anti-parallel
Strand 5	D	87	89	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	D	71	74	anti-parallel
Strand 3	D	7	13	anti-parallel
Strand 4	D	44	48	anti-parallel
Strand 5	D	38	41	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	B	5	9	parallel
Strand 3	B	38	43	parallel
Strand 4	B	64	66	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	30	34	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	C	49	51	anti-parallel
Strand 3	C	14	18	parallel
Strand 4	C	21	25	anti-parallel
Strand 5	C	31	34	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	C	74	80	anti-parallel
Strand 3	C	64	68	anti-parallel
Strand 4	C	38	43	parallel
Strand 5	C	5	9	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	258	261	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	255	first strand
Strand 2	C	258	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H6T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H6T