Analysis of interatomic Contacts of Structural Units in PDB entry:
9H71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H71 entry

There are 4 chains in PDB entry 9H71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 35	LYS 310
B	PRO 34	ASP 309
C	LYS 1	GLU 65
D	LYS 1	GLU 65

There are 12 helices in PDB entry 9H71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	92	Right-handed 310
Helix 2	AA2	A	176	180	Right-handed 310
Helix 3	AA3	A	281	285	Right-handed 310
Helix 4	AA4	B	88	92	Right-handed 310
Helix 5	AA5	B	176	180	Right-handed 310
Helix 6	AA6	B	281	285	Right-handed 310
Helix 7	AA7	C	4	21	Right-handed alpha
Helix 8	AA8	C	31	47	Right-handed alpha
Helix 9	AA9	C	49	63	Right-handed alpha
Helix 10	AB1	D	4	21	Right-handed alpha
Helix 11	AB2	D	31	47	Right-handed alpha
Helix 12	AB3	D	49	64	Right-handed alpha

There are 14 sheets in PDB entry 9H71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	81	84	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	49	first strand
Strand 2	A	104	112	parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	63	70	anti-parallel
Strand 5	A	73	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	200	205	parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	144	149	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	200	205	parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	193	196	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	162	165	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	269	277	anti-parallel
Strand 4	A	256	263	anti-parallel
Strand 5	C	24	28	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	298	308	parallel
Strand 3	A	286	293	anti-parallel
Strand 4	A	243	247	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	81	84	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	49	first strand
Strand 2	B	104	112	parallel
Strand 3	B	93	99	anti-parallel
Strand 4	B	63	70	anti-parallel
Strand 5	B	73	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	200	205	parallel
Strand 3	B	182	190	anti-parallel
Strand 4	B	144	149	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	200	205	parallel
Strand 3	B	182	190	anti-parallel
Strand 4	B	193	196	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	162	165	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	269	277	anti-parallel
Strand 4	B	256	264	anti-parallel
Strand 5	D	22	28	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	298	308	parallel
Strand 3	B	286	293	anti-parallel
Strand 4	B	243	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H71

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H71