Analysis of interatomic Contacts of Structural Units in PDB entry:
9H72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H72 entry

There are 9 chains in PDB entry 9H72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	MET 1	ASN 218
L	MET 1	ASN 218
N	MET 1	ASN 218
M	MET 1	ASN 218
A	GLU 100	CYS 111
B	GLY 3	LEU 290
C	ALA 2	ILE 289
D	C 1	C 12
E	G 1	G 12

There are 48 helices in PDB entry 9H72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	24	37	Right-handed alpha
Helix 2	AA2	O	64	68	Right-handed 310
Helix 3	AA3	O	72	89	Right-handed alpha
Helix 4	AA4	O	90	115	Right-handed alpha
Helix 5	AA5	O	125	134	Right-handed alpha
Helix 6	AA6	O	143	155	Right-handed alpha
Helix 7	AA7	O	174	188	Right-handed alpha
Helix 8	AA8	L	24	37	Right-handed alpha
Helix 9	AA9	L	72	90	Right-handed alpha
Helix 10	AB1	L	90	115	Right-handed alpha
Helix 11	AB2	L	125	134	Right-handed alpha
Helix 12	AB3	L	143	158	Right-handed alpha
Helix 13	AB4	L	176	189	Right-handed alpha
Helix 14	AB5	N	24	37	Right-handed alpha
Helix 15	AB6	N	72	90	Right-handed alpha
Helix 16	AB7	N	90	114	Right-handed alpha
Helix 17	AB8	N	125	134	Right-handed alpha
Helix 18	AB9	N	143	156	Right-handed alpha
Helix 19	AC1	N	174	188	Right-handed alpha
Helix 20	AC2	M	24	37	Right-handed alpha
Helix 21	AC3	M	72	90	Right-handed alpha
Helix 22	AC4	M	90	115	Right-handed alpha
Helix 23	AC5	M	125	134	Right-handed alpha
Helix 24	AC6	M	143	158	Right-handed alpha
Helix 25	AC7	M	176	189	Right-handed alpha
Helix 26	AC8	B	52	61	Right-handed alpha
Helix 27	AC9	B	86	96	Right-handed alpha
Helix 28	AD1	B	98	124	Right-handed alpha
Helix 29	AD2	B	126	139	Right-handed alpha
Helix 30	AD3	B	147	162	Right-handed alpha
Helix 31	AD4	B	171	195	Right-handed alpha
Helix 32	AD5	B	212	219	Right-handed alpha
Helix 33	AD6	B	222	233	Right-handed alpha
Helix 34	AD7	B	237	246	Right-handed alpha
Helix 35	AD8	B	247	250	Right-handed 310
Helix 36	AD9	B	262	279	Right-handed alpha
Helix 37	AE1	C	52	61	Right-handed alpha
Helix 38	AE2	C	85	87	Right-handed 310
Helix 39	AE3	C	88	96	Right-handed alpha
Helix 40	AE4	C	98	124	Right-handed alpha
Helix 41	AE5	C	126	139	Right-handed alpha
Helix 42	AE6	C	147	162	Right-handed alpha
Helix 43	AE7	C	171	196	Right-handed alpha
Helix 44	AE8	C	212	220	Right-handed alpha
Helix 45	AE9	C	222	233	Right-handed alpha
Helix 46	AF1	C	237	246	Right-handed alpha
Helix 47	AF2	C	247	249	Right-handed 310
Helix 48	AF3	C	262	278	Right-handed alpha

There are 16 sheets in PDB entry 9H72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	3	first strand
Strand 2	O	46	47	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	62	first strand
Strand 2	O	163	167	parallel
Strand 3	O	192	196	parallel
Strand 4	O	18	22	parallel
Strand 5	O	205	208	parallel
Strand 6	O	214	215	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	119	120	first strand
Strand 2	M	136	137	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	136	137	first strand
Strand 2	M	119	120	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	2	4	anti-parallel
Strand 3	L	45	47	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	62	first strand
Strand 2	L	163	167	parallel
Strand 3	L	192	196	parallel
Strand 4	L	18	22	parallel
Strand 5	L	205	208	parallel
Strand 6	L	214	217	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	120	first strand
Strand 2	N	136	137	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	3	first strand
Strand 2	N	12	13	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	62	first strand
Strand 2	N	163	167	parallel
Strand 3	N	192	196	parallel
Strand 4	N	18	22	parallel
Strand 5	N	206	208	parallel
Strand 6	N	214	215	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	13	first strand
Strand 2	M	2	4	anti-parallel
Strand 3	M	45	47	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	62	first strand
Strand 2	M	163	167	parallel
Strand 3	M	192	196	parallel
Strand 4	M	18	22	parallel
Strand 5	M	205	208	parallel
Strand 6	M	215	217	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	B	5	9	parallel
Strand 3	B	38	43	parallel
Strand 4	B	64	68	parallel
Strand 5	B	74	80	anti-parallel
Strand 6	C	74	80	anti-parallel
Strand 7	C	64	68	anti-parallel
Strand 8	C	38	43	parallel
Strand 9	C	5	9	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	25	first strand
Strand 2	B	30	34	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	C	49	51	anti-parallel
Strand 3	C	14	17	parallel
Strand 4	C	21	25	anti-parallel
Strand 5	C	30	34	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	258	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	255	first strand
Strand 2	C	258	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H72

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H72