Analysis of interatomic Contacts of Structural Units in PDB entry:
9H78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H78 entry

There are 4 chains in PDB entry 9H78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4PRO 247
B
 LYS 28LEU 316
C
 ILE 4LYS 237
D
 LYS 28LEU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9H78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 54Right-handed alpha
Helix 2
AA2
A
76 83Right-handed alpha
Helix 3
AA3
A
99 104Right-handed alpha
Helix 4
AA4
A
115 130Right-handed alpha
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
147 163Right-handed alpha
Helix 7
AA7
A
181 195Right-handed alpha
Helix 8
AA8
A
204 209Right-handed alpha
Helix 9
AA9
A
227 240Right-handed alpha
Helix 10
AB1
B
287 296Right-handed alpha
Helix 11
AB2
B
300 313Right-handed alpha
Helix 12
AB3
C
44 54Right-handed alpha
Helix 13
AB4
C
76 83Right-handed alpha
Helix 14
AB5
C
99 104Right-handed alpha
Helix 15
AB6
C
115 130Right-handed alpha
Helix 16
AB7
C
133 138Right-handed alpha
Helix 17
AB8
C
147 163Right-handed alpha
Helix 18
AB9
C
181 194Right-handed alpha
Helix 19
AC1
C
204 209Right-handed alpha
Helix 20
AC2
C
227 237Right-handed alpha
Helix 21
AC3
D
287 296Right-handed alpha
Helix 22
AC4
D
300 313Right-handed alpha
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There are 6 sheets in PDB entry 9H78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 29first strand
Strand 2
A
7 16anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
70 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
166 170parallel
Strand 3
A
197 201parallel
Strand 4
A
34 38parallel
Strand 5
A
213 218parallel
Strand 6
A
221 226anti-parallel
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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 43first strand
Strand 2
B
31 35anti-parallel
Strand 3
B
75 80parallel
Strand 4
B
101 110parallel
Strand 5
B
131 140parallel
Strand 6
B
161 170parallel
Strand 7
B
189 198parallel
Strand 8
B
218 227parallel
Strand 9
B
247 256parallel
Strand 10
B
276 284parallel
Strand 11
D
276 284anti-parallel
Strand 12
D
247 256parallel
Strand 13
D
218 227parallel
Strand 14
D
189 198parallel
Strand 15
D
161 168parallel
Strand 16
D
131 140parallel
Strand 17
D
101 110parallel
Strand 18
D
70 80parallel
Strand 19
D
31 35parallel
Strand 20
D
38 43anti-parallel
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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
87 96parallel
Strand 4
B
114 126parallel
Strand 5
B
145 156parallel
Strand 6
B
175 184parallel
Strand 7
B
203 212parallel
Strand 8
B
232 241parallel
Strand 9
B
261 270parallel
Strand 10
D
261 270anti-parallel
Strand 11
D
232 241parallel
Strand 12
D
203 212parallel
Strand 13
D
175 184parallel
Strand 14
D
146 156parallel
Strand 15
D
116 126parallel
Strand 16
D
87 96parallel
Strand 17
D
58 65parallel
Strand 18
D
48 55anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 29first strand
Strand 2
C
7 16anti-parallel
Strand 3
C
62 67anti-parallel
Strand 4
C
70 71anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 88first strand
Strand 2
C
166 170parallel
Strand 3
C
197 201parallel
Strand 4
C
34 38parallel
Strand 5
C
213 218parallel
Strand 6
C
221 226anti-parallel
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