Analysis of interatomic Contacts of Structural Units in PDB entry:
9H80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H80 entry

There are 13 chains in PDB entry 9H80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	GLY 803	ARG 1193
C	CYS 19	GLU 172
D	CYS 19	GLU 172
E	CYS 19	GLU 172
F	CYS 19	GLU 172
G	CYS 19	GLU 172
H	CYS 19	GLU 172
I	CYS 19	GLU 172
J	CYS 19	GLU 172
K	CYS 19	GLU 172
L	CYS 19	GLU 172
A	CYS 19	GLU 172
B	CYS 19	GLU 172

There are 46 helices in PDB entry 9H80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	804	815	Right-handed alpha
Helix 2	AA2	M	816	826	Right-handed alpha
Helix 3	AA3	M	830	841	Right-handed alpha
Helix 4	AA4	M	843	853	Right-handed alpha
Helix 5	AA5	M	862	878	Right-handed alpha
Helix 6	AA6	M	995	1001	Right-handed alpha
Helix 7	AA7	M	1077	1081	Right-handed 310
Helix 8	AA8	M	1094	1099	Right-handed alpha
Helix 9	AA9	C	49	65	Right-handed alpha
Helix 10	AB1	C	84	99	Right-handed alpha
Helix 11	AB2	C	153	169	Right-handed alpha
Helix 12	AB3	D	49	65	Right-handed alpha
Helix 13	AB4	D	84	99	Right-handed alpha
Helix 14	AB5	D	153	169	Right-handed alpha
Helix 15	AB6	E	49	65	Right-handed alpha
Helix 16	AB7	E	84	99	Right-handed alpha
Helix 17	AB8	E	153	168	Right-handed alpha
Helix 18	AB9	F	49	65	Right-handed alpha
Helix 19	AC1	F	79	83	Right-handed 310
Helix 20	AC2	F	84	99	Right-handed alpha
Helix 21	AC3	F	153	169	Right-handed alpha
Helix 22	AC4	G	49	65	Right-handed alpha
Helix 23	AC5	G	84	100	Right-handed alpha
Helix 24	AC6	G	153	169	Right-handed alpha
Helix 25	AC7	H	49	66	Right-handed alpha
Helix 26	AC8	H	84	100	Right-handed alpha
Helix 27	AC9	H	153	169	Right-handed alpha
Helix 28	AD1	I	49	65	Right-handed alpha
Helix 29	AD2	I	84	100	Right-handed alpha
Helix 30	AD3	I	153	169	Right-handed alpha
Helix 31	AD4	J	49	65	Right-handed alpha
Helix 32	AD5	J	79	83	Right-handed 310
Helix 33	AD6	J	84	99	Right-handed alpha
Helix 34	AD7	J	153	169	Right-handed alpha
Helix 35	AD8	K	49	65	Right-handed alpha
Helix 36	AD9	K	84	99	Right-handed alpha
Helix 37	AE1	K	153	169	Right-handed alpha
Helix 38	AE2	L	49	65	Right-handed alpha
Helix 39	AE3	L	84	100	Right-handed alpha
Helix 40	AE4	L	153	169	Right-handed alpha
Helix 41	AE5	A	49	65	Right-handed alpha
Helix 42	AE6	A	84	99	Right-handed alpha
Helix 43	AE7	A	153	168	Right-handed alpha
Helix 44	AE8	B	49	65	Right-handed alpha
Helix 45	AE9	B	84	99	Right-handed alpha
Helix 46	AF1	B	153	168	Right-handed alpha

There are 30 sheets in PDB entry 9H80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	921	924	first strand
Strand 2	M	894	906	anti-parallel
Strand 3	M	911	918	anti-parallel
Strand 4	M	936	946	anti-parallel
Strand 5	M	949	959	anti-parallel
Strand 6	M	965	977	anti-parallel
Strand 7	M	980	990	anti-parallel
Strand 8	M	1002	1014	anti-parallel
Strand 9	M	1019	1032	anti-parallel
Strand 10	M	1037	1053	anti-parallel
Strand 11	M	1058	1072	anti-parallel
Strand 12	M	1102	1114	anti-parallel
Strand 13	M	1127	1138	anti-parallel
Strand 14	M	1143	1154	anti-parallel
Strand 15	M	1160	1169	anti-parallel
Strand 16	M	1180	1190	anti-parallel
Strand 17	M	881	890	anti-parallel
Strand 18	M	894	906	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	122	131	anti-parallel
Strand 4	C	103	114	anti-parallel
Strand 5	C	42	43	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	122	131	anti-parallel
Strand 4	C	103	114	anti-parallel
Strand 5	C	36	38	parallel
Strand 6	C	70	71	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	171	172	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	138	147	anti-parallel
Strand 3	D	122	131	anti-parallel
Strand 4	D	103	114	anti-parallel
Strand 5	D	36	38	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	138	147	anti-parallel
Strand 3	D	122	131	anti-parallel
Strand 4	D	103	114	anti-parallel
Strand 5	D	42	43	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	122	131	anti-parallel
Strand 4	E	104	114	anti-parallel
Strand 5	E	42	43	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	70	71	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	138	147	anti-parallel
Strand 3	F	122	131	anti-parallel
Strand 4	F	103	114	anti-parallel
Strand 5	F	42	43	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	138	147	anti-parallel
Strand 3	F	122	131	anti-parallel
Strand 4	F	103	114	anti-parallel
Strand 5	F	36	38	parallel
Strand 6	F	70	71	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	171	172	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	138	147	anti-parallel
Strand 3	G	122	131	anti-parallel
Strand 4	G	103	114	anti-parallel
Strand 5	G	42	43	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	138	147	anti-parallel
Strand 3	G	122	131	anti-parallel
Strand 4	G	103	114	anti-parallel
Strand 5	G	36	38	parallel
Strand 6	G	70	71	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	171	172	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	138	146	anti-parallel
Strand 3	H	122	131	anti-parallel
Strand 4	H	103	114	anti-parallel
Strand 5	H	42	43	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	138	146	anti-parallel
Strand 3	H	122	131	anti-parallel
Strand 4	H	103	114	anti-parallel
Strand 5	H	36	38	parallel
Strand 6	H	70	71	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	22	first strand
Strand 2	I	138	147	anti-parallel
Strand 3	I	122	131	anti-parallel
Strand 4	I	103	114	anti-parallel
Strand 5	I	36	43	parallel
Strand 6	I	70	71	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	31	first strand
Strand 2	I	171	172	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	22	first strand
Strand 2	J	138	147	anti-parallel
Strand 3	J	122	131	anti-parallel
Strand 4	J	104	114	anti-parallel
Strand 5	J	42	43	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	31	first strand
Strand 2	J	171	172	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	38	first strand
Strand 2	J	70	71	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	22	first strand
Strand 2	K	138	147	anti-parallel
Strand 3	K	104	131	anti-parallel
Strand 4	K	42	43	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	31	first strand
Strand 2	K	171	172	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	22	first strand
Strand 2	L	138	147	anti-parallel
Strand 3	L	122	131	anti-parallel
Strand 4	L	103	114	anti-parallel
Strand 5	L	42	43	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	22	first strand
Strand 2	L	138	147	anti-parallel
Strand 3	L	122	131	anti-parallel
Strand 4	L	103	114	anti-parallel
Strand 5	L	36	38	parallel
Strand 6	L	70	71	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	171	172	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	138	147	anti-parallel
Strand 3	A	122	131	anti-parallel
Strand 4	A	104	114	anti-parallel
Strand 5	A	42	43	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	70	71	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	138	146	anti-parallel
Strand 3	B	121	131	anti-parallel
Strand 4	B	103	115	anti-parallel
Strand 5	B	42	43	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	138	146	anti-parallel
Strand 3	B	121	131	anti-parallel
Strand 4	B	103	115	anti-parallel
Strand 5	B	36	38	parallel
Strand 6	B	70	71	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H80