Analysis of interatomic Contacts of Structural Units in PDB entry:
9H85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H85 entry

There are 5 chains in PDB entry 9H85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 70	TRP 792
B	PHE 1	ARG 370
C	CYS 3	LEU 67
D	SER 1	THR 223
E	LEU 1	ASN 91

There are 34 helices in PDB entry 9H85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	96	Right-handed alpha
Helix 2	AA2	A	106	122	Right-handed alpha
Helix 3	AA3	A	167	173	Right-handed alpha
Helix 4	AA4	A	193	211	Right-handed alpha
Helix 5	AA5	A	258	266	Right-handed alpha
Helix 6	AA6	A	275	292	Right-handed alpha
Helix 7	AA7	A	339	345	Right-handed alpha
Helix 8	AA8	A	356	370	Right-handed alpha
Helix 9	AA9	A	407	411	Right-handed 310
Helix 10	AB1	A	430	434	Right-handed 310
Helix 11	AB2	A	479	482	Right-handed 310
Helix 12	AB3	A	524	534	Right-handed alpha
Helix 13	AB4	A	624	626	Right-handed 310
Helix 14	AB5	A	629	633	Right-handed 310
Helix 15	AB6	A	637	642	Right-handed alpha
Helix 16	AB7	A	673	677	Right-handed 310
Helix 17	AB8	A	732	736	Right-handed 310
Helix 18	AB9	B	217	222	Right-handed alpha
Helix 19	AC1	C	40	44	Right-handed 310
Helix 20	AC2	C	54	58	Right-handed 310
Helix 21	AC3	D	9	24	Right-handed alpha
Helix 22	AC4	D	25	40	Right-handed alpha
Helix 23	AC5	D	45	60	Right-handed alpha
Helix 24	AC6	D	62	77	Right-handed alpha
Helix 25	AC7	D	82	97	Right-handed alpha
Helix 26	AC8	D	100	107	Right-handed alpha
Helix 27	AC9	D	115	132	Right-handed alpha
Helix 28	AD1	D	137	167	Right-handed alpha
Helix 29	AD2	D	168	182	Right-handed alpha
Helix 30	AD3	D	186	203	Right-handed alpha
Helix 31	AD4	D	205	220	Right-handed alpha
Helix 32	AD5	E	17	22	Right-handed alpha
Helix 33	AD6	E	29	38	Right-handed alpha
Helix 34	AD7	E	59	62	Right-handed 310

There are 17 sheets in PDB entry 9H85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	140	148	parallel
Strand 3	A	128	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	161	first strand
Strand 2	A	231	239	parallel
Strand 3	A	217	225	anti-parallel
Strand 4	B	170	172	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	254	first strand
Strand 2	A	312	320	parallel
Strand 3	A	299	301	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	254	first strand
Strand 2	A	312	320	parallel
Strand 3	A	305	307	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	333	first strand
Strand 2	A	389	398	parallel
Strand 3	A	373	379	anti-parallel

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There are 16 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	784	788	anti-parallel
Strand 3	A	765	771	anti-parallel
Strand 4	A	749	758	anti-parallel
Strand 5	A	716	727	anti-parallel
Strand 6	A	692	702	anti-parallel
Strand 7	A	610	622	anti-parallel
Strand 8	A	590	602	anti-parallel
Strand 9	A	572	582	anti-parallel
Strand 10	A	547	560	anti-parallel
Strand 11	A	505	519	anti-parallel
Strand 12	A	487	500	anti-parallel
Strand 13	A	466	477	anti-parallel
Strand 14	A	449	457	anti-parallel
Strand 15	A	437	444	anti-parallel
Strand 16	A	422	426	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	656	first strand
Strand 2	A	682	687	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	29	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	355	359	anti-parallel
Strand 4	B	350	352	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	58	63	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	96	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	119	124	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	139	143	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	159	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	184	189	anti-parallel
Strand 3	B	193	198	anti-parallel
Strand 4	B	204	209	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	235	238	anti-parallel
Strand 3	B	246	249	anti-parallel
Strand 4	B	255	258	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	283	287	anti-parallel
Strand 4	B	293	297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	314	318	anti-parallel
Strand 3	B	323	328	anti-parallel
Strand 4	B	334	339	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	50	58	anti-parallel
Strand 3	E	42	43	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	50	58	anti-parallel
Strand 3	E	65	73	anti-parallel
Strand 4	E	79	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H85

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H85