Analysis of interatomic Contacts of Structural Units in PDB entry:
9H8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H8I entry

There is 1 chain in PDB entry 9H8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26ARG 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9H8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
223 227Right-handed 310
Helix 2
AA2
A
287 290Right-handed 310
Helix 3
AA3
A
328 332Right-handed 310
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There are 9 sheets in PDB entry 9H8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
68 74anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
118 125anti-parallel
Strand 4
A
133 134anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 157first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
185 191anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 207first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
232 239anti-parallel
Strand 4
A
244 246anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 207first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
232 239anti-parallel
Strand 4
A
252 253anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
278 285anti-parallel
Strand 3
A
302 304anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
278 285anti-parallel
Strand 3
A
308 314anti-parallel
Strand 4
A
320 326anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
461 481anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
386 391anti-parallel
Strand 5
A
396 400anti-parallel
Strand 6
A
415 419anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 350first strand
Strand 2
A
461 481anti-parallel
Strand 3
A
358 366anti-parallel
Strand 4
A
426 433anti-parallel
Strand 5
A
437 442anti-parallel
Strand 6
A
447 452anti-parallel
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