Analysis of interatomic Contacts of Structural Units in PDB entry:
9H8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H8K entry

There is 1 chain in PDB entry 9H8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 9H8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
15 41Right-handed alpha
Helix 3
AA3
A
55 65Right-handed alpha
Helix 4
AA4
A
68 70Right-handed 310
Helix 5
AA5
A
83 87Right-handed 310
Helix 6
AA6
A
90 95Right-handed alpha
Helix 7
AA7
A
109 114Right-handed 310
Helix 8
AA8
A
115 120Right-handed alpha
Helix 9
AA9
A
124 145Right-handed alpha
Helix 10
AB1
A
157 170Right-handed alpha
Helix 11
AB2
A
174 178Right-handed 310
Helix 12
AB3
A
179 185Right-handed alpha
Helix 13
AB4
A
188 204Right-handed alpha
Helix 14
AB5
A
217 240Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9H8K.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
103 107parallel
Strand 3
A
43 49parallel
Strand 4
A
147 155parallel
Strand 5
A
210 214parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il