Analysis of interatomic Contacts of Structural Units in PDB entry:
9H8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H8M entry

There is 1 chain in PDB entry 9H8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8ARG 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9H8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
119 128Right-handed alpha
Helix 5
AA5
A
129 130Right-handed 310
Helix 6
AA6
A
131 133Right-handed 310
Helix 7
AA7
A
176 184Right-handed alpha
Helix 8
AA8
A
206 214Right-handed alpha
Helix 9
AA9
A
215 219Right-handed 310
Helix 10
AB1
A
237 239Right-handed 310
Helix 11
AB2
A
261 266Right-handed alpha
Helix 12
AB3
A
272 279Right-handed alpha
Helix 13
AB4
A
283 292Right-handed alpha
Helix 14
AB5
A
322 327Right-handed alpha
Helix 15
AB6
A
335 356Right-handed alpha
Helix 16
AB7
A
360 394Right-handed alpha
Helix 17
AB8
A
399 402Right-handed 310
Helix 18
AB9
A
403 420Right-handed alpha
Helix 19
AC1
A
422 437Right-handed alpha
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There are 4 sheets in PDB entry 9H8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
34 37parallel
Strand 3
A
11 14parallel
Strand 4
A
167 170parallel
Strand 5
A
318 320parallel
Strand 6
A
314 315anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
115 118anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 109first strand
Strand 2
A
82 92anti-parallel
Strand 3
A
221 225parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
241 249anti-parallel
Strand 6
A
193 205anti-parallel
Strand 7
A
297 304anti-parallel
Strand 8
A
267 270anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
153 157anti-parallel
Strand 3
A
162 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il