Analysis of interatomic Contacts of Structural Units in PDB entry:
9H8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H8N entry

There are 2 chains in PDB entry 9H8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9GLN 576
B
 LYS 9GLN 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 9H8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
26 44Right-handed alpha
Helix 3
AA3
A
45 57Right-handed alpha
Helix 4
AA4
A
64 109Right-handed alpha
Helix 5
AA5
A
113 117Right-handed alpha
Helix 6
AA6
A
120 140Right-handed alpha
Helix 7
AA7
A
140 162Right-handed alpha
Helix 8
AA8
A
164 210Right-handed alpha
Helix 9
AA9
A
213 219Right-handed alpha
Helix 10
AB1
A
222 274Right-handed alpha
Helix 11
AB2
A
280 295Right-handed alpha
Helix 12
AB3
A
296 322Right-handed alpha
Helix 13
AB4
A
380 388Right-handed alpha
Helix 14
AB5
A
410 416Right-handed alpha
Helix 15
AB6
A
432 436Right-handed alpha
Helix 16
AB7
A
446 455Right-handed alpha
Helix 17
AB8
A
458 462Right-handed alpha
Helix 18
AB9
A
481 495Right-handed alpha
Helix 19
AC1
A
514 525Right-handed alpha
Helix 20
AC2
A
537 540Right-handed 310
Helix 21
AC3
A
560 565Right-handed alpha
Helix 22
AC4
A
571 575Right-handed alpha
Helix 23
AC5
B
12 21Right-handed alpha
Helix 24
AC6
B
26 44Right-handed alpha
Helix 25
AC7
B
45 57Right-handed alpha
Helix 26
AC8
B
64 109Right-handed alpha
Helix 27
AC9
B
113 117Right-handed alpha
Helix 28
AD1
B
120 140Right-handed alpha
Helix 29
AD2
B
140 162Right-handed alpha
Helix 30
AD3
B
164 210Right-handed alpha
Helix 31
AD4
B
213 219Right-handed alpha
Helix 32
AD5
B
222 274Right-handed alpha
Helix 33
AD6
B
280 295Right-handed alpha
Helix 34
AD7
B
296 322Right-handed alpha
Helix 35
AD8
B
380 388Right-handed alpha
Helix 36
AD9
B
410 416Right-handed alpha
Helix 37
AF1
B
432 436Right-handed alpha
Helix 38
AF2
B
446 455Right-handed alpha
Helix 39
AF3
B
458 462Right-handed alpha
Helix 40
AF4
B
481 495Right-handed alpha
Helix 41
AF5
B
514 525Right-handed alpha
Helix 42
AF6
B
537 540Right-handed 310
Helix 43
AF7
B
560 565Right-handed alpha
Helix 44
AF8
B
571 575Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9H8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 364first strand
Strand 2
A
341 348anti-parallel
Strand 3
A
396 400anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
499 503parallel
Strand 3
A
529 533parallel
Strand 4
A
368 373parallel
Strand 5
A
545 550parallel
Strand 6
A
553 557anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 364first strand
Strand 2
B
341 348anti-parallel
Strand 3
B
396 400anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 421first strand
Strand 2
B
499 503parallel
Strand 3
B
529 533parallel
Strand 4
B
368 373parallel
Strand 5
B
545 550parallel
Strand 6
B
553 557anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il