Analysis of interatomic Contacts of Structural Units in PDB entry:
9H8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H8T entry

There are 21 chains in PDB entry 9H8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 87	LYS 325
A	SER 79	GLY 274
G	SER 8	LYS 111
C	GLY 2	LYS 82
E	ALA 2	LYS 57
F	GLU 25	LYS 91
K	GLN 36	LEU 453
J	THR 2	TRP 379
L	THR 35	PHE 480
H	MET 2	PRO 46
T	MET 1	CYS 77
d	VAL 87	LYS 325
a	SER 79	GLY 274
g	SER 8	LYS 111
c	GLY 2	LYS 82
e	ALA 2	LYS 57
f	GLU 25	LYS 91
k	GLN 36	LEU 453
j	THR 2	TRP 379
l	THR 35	PHE 480
h	MET 2	PRO 46

There are193 helices in PDB entry 9H8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	106	120	Right-handed alpha
Helix 2	AA2	D	131	136	Right-handed 310
Helix 3	AA3	D	141	151	Right-handed alpha
Helix 4	AA4	D	181	188	Right-handed alpha
Helix 5	AA5	D	207	217	Right-handed alpha
Helix 6	AA6	D	262	279	Right-handed alpha
Helix 7	AA7	D	281	316	Right-handed alpha
Helix 8	AA8	A	93	98	Right-handed alpha
Helix 9	AA9	A	102	138	Right-handed alpha
Helix 10	AB1	A	157	159	Right-handed 310
Helix 11	AB2	A	180	189	Right-handed alpha
Helix 12	AB3	A	191	195	Right-handed 310
Helix 13	AB4	A	200	204	Right-handed 310
Helix 14	AB5	G	9	26	Right-handed alpha
Helix 15	AB6	G	27	31	Right-handed 310
Helix 16	AB7	G	34	38	Right-handed 310
Helix 17	AB8	G	41	50	Right-handed alpha
Helix 18	AB9	G	52	72	Right-handed alpha
Helix 19	AC1	G	77	81	Right-handed 310
Helix 20	AC2	G	91	110	Right-handed alpha
Helix 21	AC3	C	21	24	Right-handed 310
Helix 22	AC4	C	33	44	Right-handed alpha
Helix 23	AC5	C	45	70	Right-handed alpha
Helix 24	AC6	C	75	80	Right-handed alpha
Helix 25	AC7	E	5	14	Right-handed alpha
Helix 26	AC8	E	17	48	Right-handed alpha
Helix 27	AC9	E	52	57	Right-handed alpha
Helix 28	AD1	F	28	38	Right-handed alpha
Helix 29	AD2	F	40	60	Right-handed alpha
Helix 30	AD3	F	67	84	Right-handed alpha
Helix 31	AD4	K	68	72	Right-handed 310
Helix 32	AD5	K	78	86	Right-handed alpha
Helix 33	AD6	K	95	106	Right-handed alpha
Helix 34	AD7	K	129	143	Right-handed alpha
Helix 35	AD8	K	147	155	Right-handed alpha
Helix 36	AD9	K	156	166	Right-handed alpha
Helix 37	AE1	K	169	182	Right-handed alpha
Helix 38	AE2	K	193	197	Right-handed 310
Helix 39	AE3	K	201	213	Right-handed alpha
Helix 40	AE4	K	214	216	Right-handed 310
Helix 41	AE5	K	226	235	Right-handed alpha
Helix 42	AE6	K	236	238	Right-handed 310
Helix 43	AE7	K	280	294	Right-handed alpha
Helix 44	AE8	K	307	315	Right-handed alpha
Helix 45	AE9	K	346	363	Right-handed alpha
Helix 46	AF1	K	367	385	Right-handed alpha
Helix 47	AF2	K	388	401	Right-handed alpha
Helix 48	AF3	K	408	418	Right-handed alpha
Helix 49	AF4	K	420	434	Right-handed alpha
Helix 50	AF5	K	449	453	Right-handed 310
Helix 51	AF6	J	3	7	Right-handed 310
Helix 52	AF7	J	8	19	Right-handed alpha
Helix 53	AF8	J	28	31	Right-handed 310
Helix 54	AF9	J	32	53	Right-handed alpha
Helix 55	AG1	J	61	73	Right-handed alpha
Helix 56	AG2	J	75	105	Right-handed alpha
Helix 57	AG3	J	106	108	Right-handed 310
Helix 58	AG4	J	109	132	Right-handed alpha
Helix 59	AG5	J	136	149	Right-handed alpha
Helix 60	AG6	J	150	153	Right-handed 310
Helix 61	AG7	J	156	166	Right-handed alpha
Helix 62	AG8	J	171	201	Right-handed alpha
Helix 63	AG9	J	222	245	Right-handed alpha
Helix 64	AH1	J	252	257	Right-handed 310
Helix 65	AH2	J	271	273	Right-handed 310
Helix 66	AH3	J	274	283	Right-handed alpha
Helix 67	AH4	J	286	300	Right-handed alpha
Helix 68	AH5	J	301	308	Right-handed 310
Helix 69	AH6	J	314	317	Right-handed 310
Helix 70	AH7	J	318	340	Right-handed alpha
Helix 71	AH8	J	344	364	Right-handed alpha
Helix 72	AH9	J	364	377	Right-handed alpha
Helix 73	AI1	L	37	42	Right-handed alpha
Helix 74	AI2	L	78	82	Right-handed 310
Helix 75	AI3	L	88	96	Right-handed alpha
Helix 76	AI4	L	107	116	Right-handed alpha
Helix 77	AI5	L	139	153	Right-handed alpha
Helix 78	AI6	L	157	174	Right-handed alpha
Helix 79	AI7	L	178	192	Right-handed alpha
Helix 80	AI8	L	195	199	Right-handed 310
Helix 81	AI9	L	204	209	Right-handed alpha
Helix 82	AJ1	L	212	224	Right-handed alpha
Helix 83	AJ2	L	225	227	Right-handed 310
Helix 84	AJ3	L	238	251	Right-handed alpha
Helix 85	AJ4	L	300	312	Right-handed alpha
Helix 86	AJ5	L	361	363	Right-handed 310
Helix 87	AJ6	L	364	383	Right-handed alpha
Helix 88	AJ7	L	384	403	Right-handed alpha
Helix 89	AJ8	L	405	420	Right-handed alpha
Helix 90	AJ9	L	425	436	Right-handed alpha
Helix 91	AK1	L	437	449	Right-handed alpha
Helix 92	AK2	L	467	473	Right-handed alpha
Helix 93	AK3	L	474	476	Right-handed 310
Helix 94	AK4	H	7	36	Right-handed alpha
Helix 95	AK5	H	38	43	Right-handed alpha
Helix 96	AK6	T	3	9	Right-handed alpha
Helix 97	AK7	T	10	12	Right-handed 310
Helix 98	AK8	T	51	56	Right-handed alpha
Helix 99	AK9	d	106	120	Right-handed alpha
Helix 100	AL1	d	131	136	Right-handed 310
Helix 101	AL2	d	141	151	Right-handed alpha
Helix 102	AL3	d	181	188	Right-handed alpha
Helix 103	AL4	d	207	217	Right-handed alpha
Helix 104	AL5	d	262	279	Right-handed alpha
Helix 105	AL6	d	281	316	Right-handed alpha
Helix 106	AL7	a	93	98	Right-handed alpha
Helix 107	AL8	a	102	138	Right-handed alpha
Helix 108	AL9	a	157	159	Right-handed 310
Helix 109	AM1	a	180	189	Right-handed alpha
Helix 110	AM2	a	191	195	Right-handed 310
Helix 111	AM3	a	200	204	Right-handed 310
Helix 112	AM4	g	9	26	Right-handed alpha
Helix 113	AM5	g	27	31	Right-handed 310
Helix 114	AM6	g	34	38	Right-handed 310
Helix 115	AM7	g	41	50	Right-handed alpha
Helix 116	AM8	g	52	72	Right-handed alpha
Helix 117	AM9	g	77	81	Right-handed 310
Helix 118	AN1	g	91	110	Right-handed alpha
Helix 119	AN2	c	21	24	Right-handed 310
Helix 120	AN3	c	33	44	Right-handed alpha
Helix 121	AN4	c	45	70	Right-handed alpha
Helix 122	AN5	c	75	80	Right-handed alpha
Helix 123	AN6	e	5	14	Right-handed alpha
Helix 124	AN7	e	17	48	Right-handed alpha
Helix 125	AN8	e	52	57	Right-handed alpha
Helix 126	AN9	f	28	38	Right-handed alpha
Helix 127	AO1	f	40	60	Right-handed alpha
Helix 128	AO2	f	67	84	Right-handed alpha
Helix 129	AO3	k	68	72	Right-handed 310
Helix 130	AO4	k	78	86	Right-handed alpha
Helix 131	AO5	k	95	106	Right-handed alpha
Helix 132	AO6	k	129	143	Right-handed alpha
Helix 133	AO7	k	147	155	Right-handed alpha
Helix 134	AO8	k	156	166	Right-handed alpha
Helix 135	AO9	k	169	182	Right-handed alpha
Helix 136	AP1	k	193	197	Right-handed 310
Helix 137	AP2	k	201	213	Right-handed alpha
Helix 138	AP3	k	214	216	Right-handed 310
Helix 139	AP4	k	226	235	Right-handed alpha
Helix 140	AP5	k	236	238	Right-handed 310
Helix 141	AP6	k	280	294	Right-handed alpha
Helix 142	AP7	k	307	315	Right-handed alpha
Helix 143	AP8	k	346	363	Right-handed alpha
Helix 144	AP9	k	367	385	Right-handed alpha
Helix 145	AQ1	k	388	401	Right-handed alpha
Helix 146	AQ2	k	408	418	Right-handed alpha
Helix 147	AQ3	k	420	434	Right-handed alpha
Helix 148	AQ4	k	449	453	Right-handed 310
Helix 149	AQ5	j	3	7	Right-handed 310
Helix 150	AQ6	j	8	19	Right-handed alpha
Helix 151	AQ7	j	28	31	Right-handed 310
Helix 152	AQ8	j	32	53	Right-handed alpha
Helix 153	AQ9	j	61	73	Right-handed alpha
Helix 154	AR1	j	75	105	Right-handed alpha
Helix 155	AR2	j	106	108	Right-handed 310
Helix 156	AR3	j	109	132	Right-handed alpha
Helix 157	AR4	j	136	149	Right-handed alpha
Helix 158	AR5	j	150	153	Right-handed 310
Helix 159	AR6	j	156	166	Right-handed alpha
Helix 160	AR7	j	171	201	Right-handed alpha
Helix 161	AR8	j	222	245	Right-handed alpha
Helix 162	AR9	j	252	257	Right-handed 310
Helix 163	AS1	j	271	273	Right-handed 310
Helix 164	AS2	j	274	283	Right-handed alpha
Helix 165	AS3	j	286	300	Right-handed alpha
Helix 166	AS4	j	301	308	Right-handed 310
Helix 167	AS5	j	314	317	Right-handed 310
Helix 168	AS6	j	318	340	Right-handed alpha
Helix 169	AS7	j	344	364	Right-handed alpha
Helix 170	AS8	j	364	377	Right-handed alpha
Helix 171	AS9	l	37	42	Right-handed alpha
Helix 172	AT1	l	78	82	Right-handed 310
Helix 173	AT2	l	88	96	Right-handed alpha
Helix 174	AT3	l	107	116	Right-handed alpha
Helix 175	AT4	l	139	153	Right-handed alpha
Helix 176	AT5	l	157	174	Right-handed alpha
Helix 177	AT6	l	178	192	Right-handed alpha
Helix 178	AT7	l	195	199	Right-handed 310
Helix 179	AT8	l	204	209	Right-handed alpha
Helix 180	AT9	l	212	224	Right-handed alpha
Helix 181	AU1	l	225	227	Right-handed 310
Helix 182	AU2	l	238	251	Right-handed alpha
Helix 183	AU3	l	300	312	Right-handed alpha
Helix 184	AU4	l	361	363	Right-handed 310
Helix 185	AU5	l	364	383	Right-handed alpha
Helix 186	AU6	l	384	403	Right-handed alpha
Helix 187	AU7	l	405	420	Right-handed alpha
Helix 188	AU8	l	425	436	Right-handed alpha
Helix 189	AU9	l	437	449	Right-handed alpha
Helix 190	AV1	l	467	473	Right-handed alpha
Helix 191	AV2	l	474	476	Right-handed 310
Helix 192	AV3	h	7	36	Right-handed alpha
Helix 193	AV4	h	38	43	Right-handed alpha

There are 20 sheets in PDB entry 9H8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	165	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	241	242	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	321	first strand
Strand 2	C	12	19	anti-parallel
Strand 3	L	273	279	anti-parallel
Strand 4	L	455	460	parallel
Strand 5	L	285	293	anti-parallel
Strand 6	L	352	360	anti-parallel
Strand 7	L	340	347	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	270	273	anti-parallel
Strand 3	A	263	267	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	172	178	anti-parallel
Strand 3	A	210	214	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	232	236	anti-parallel
Strand 3	A	241	244	anti-parallel
Strand 4	A	249	251	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	42	first strand
Strand 2	K	48	52	anti-parallel
Strand 3	K	218	223	parallel
Strand 4	K	58	65	anti-parallel
Strand 5	K	119	126	anti-parallel
Strand 6	K	109	114	anti-parallel
Strand 7	T	17	19	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	257	261	first strand
Strand 2	K	437	442	parallel
Strand 3	K	266	274	anti-parallel
Strand 4	K	334	343	anti-parallel
Strand 5	K	322	329	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	24	first strand
Strand 2	J	217	219	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	52	first strand
Strand 2	L	58	63	anti-parallel
Strand 3	L	229	235	parallel
Strand 4	L	68	75	anti-parallel
Strand 5	L	129	136	anti-parallel
Strand 6	L	119	124	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	72	76	first strand
Strand 2	T	66	69	anti-parallel
Strand 3	k	109	114	anti-parallel
Strand 4	k	119	126	anti-parallel
Strand 5	k	58	65	anti-parallel
Strand 6	k	218	223	anti-parallel
Strand 7	k	48	52	parallel
Strand 8	k	39	42	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	153	156	first strand
Strand 2	d	165	168	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	232	233	first strand
Strand 2	d	241	242	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	318	321	first strand
Strand 2	c	12	19	anti-parallel
Strand 3	l	273	279	anti-parallel
Strand 4	l	455	460	parallel
Strand 5	l	285	293	anti-parallel
Strand 6	l	352	360	anti-parallel
Strand 7	l	340	347	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	152	155	first strand
Strand 2	a	270	273	anti-parallel
Strand 3	a	263	267	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	164	169	first strand
Strand 2	a	172	178	anti-parallel
Strand 3	a	210	214	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	225	226	first strand
Strand 2	a	232	236	anti-parallel
Strand 3	a	241	244	anti-parallel
Strand 4	a	249	251	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	257	261	first strand
Strand 2	k	437	442	parallel
Strand 3	k	266	274	anti-parallel
Strand 4	k	334	343	anti-parallel
Strand 5	k	322	329	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	22	24	first strand
Strand 2	j	217	219	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	49	52	first strand
Strand 2	l	58	63	anti-parallel
Strand 3	l	229	235	parallel
Strand 4	l	68	75	anti-parallel
Strand 5	l	129	136	anti-parallel
Strand 6	l	119	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H8T