Analysis of interatomic Contacts of Structural Units in PDB entry:
9H99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9H99 entry

There is 1 chain in PDB entry 9H99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31GLU 1189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9H99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 48Right-handed alpha
Helix 2
AA2
A
52 63Right-handed alpha
Helix 3
AA3
A
68 84Right-handed alpha
Helix 4
AA4
A
88 118Right-handed alpha
Helix 5
AA5
A
122 144Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
156 182Right-handed alpha
Helix 8
AA8
A
184 217Right-handed alpha
Helix 9
AA9
A
221 239Right-handed alpha
Helix 10
AB1
A
239 244Right-handed alpha
Helix 11
AB2
A
245 250Right-handed 310
Helix 12
AB3
A
280 284Right-handed 310
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
409 411Right-handed 310
Helix 15
AB6
A
420 425Right-handed alpha
Helix 16
AB7
A
473 475Right-handed 310
Helix 17
AB8
A
565 569Right-handed 310
Helix 18
AB9
A
616 618Right-handed 310
Helix 19
AC1
A
619 634Right-handed alpha
Helix 20
AC2
A
649 662Right-handed alpha
Helix 21
AC3
A
668 690Right-handed alpha
Helix 22
AC4
A
747 751Right-handed 310
Helix 23
AC5
A
801 805Right-handed 310
Helix 24
AC6
A
880 918Right-handed alpha
Helix 25
AC7
A
933 945Right-handed alpha
Helix 26
AC8
A
962 984Right-handed alpha
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There are 13 sheets in PDB entry 9H99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
467 471parallel
Strand 3
A
605 614anti-parallel
Strand 4
A
495 498anti-parallel
Strand 5
A
483 485anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
467 471parallel
Strand 3
A
605 614anti-parallel
Strand 4
A
519 527anti-parallel
Strand 5
A
570 571anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
442 453anti-parallel
Strand 3
A
381 392parallel
Strand 4
A
362 372anti-parallel
Strand 5
A
406 407anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
381 392anti-parallel
Strand 3
A
442 453parallel
Strand 4
A
427 439anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
319 330anti-parallel
Strand 3
A
342 343anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
319 330anti-parallel
Strand 3
A
303 314anti-parallel
Strand 4
A
349 355anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
502 511parallel
Strand 3
A
477 478anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
502 511parallel
Strand 3
A
585 592anti-parallel
Strand 4
A
531 537anti-parallel
Strand 5
A
548 554anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 710first strand
Strand 2
A
740 746anti-parallel
Strand 3
A
853 859anti-parallel
Strand 4
A
755 774anti-parallel
Strand 5
A
778 785anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 717first strand
Strand 2
A
727 730anti-parallel
Strand 3
A
865 878anti-parallel
Strand 4
A
755 774anti-parallel
Strand 5
A
835 842anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
951 952first strand
Strand 2
A
955 959anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1001first strand
Strand 2
A
1024 1030anti-parallel
Strand 3
A
1165 1172anti-parallel
Strand 4
A
1050 1056anti-parallel
Strand 5
A
1063 1068anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1005 1009first strand
Strand 2
A
1013 1018anti-parallel
Strand 3
A
1176 1186anti-parallel
Strand 4
A
1037 1046anti-parallel
Strand 5
A
1153 1159anti-parallel
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