Analysis of interatomic Contacts of Structural Units in PDB entry:
9H9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H9E entry

There are 4 chains in PDB entry 9H9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 10	ARG 418
B	ALA 2	LYS 134
C	ALA 2	LYS 134
D	ASP 10	ARG 418

There are 32 helices in PDB entry 9H9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	88	94	Right-handed alpha
Helix 4	AA4	A	174	177	Right-handed 310
Helix 5	AA5	A	223	230	Right-handed alpha
Helix 6	AA6	A	230	243	Right-handed alpha
Helix 7	AA7	A	244	247	Right-handed 310
Helix 8	AA8	A	251	274	Right-handed alpha
Helix 9	AA9	A	284	310	Right-handed alpha
Helix 10	AB1	A	390	417	Right-handed alpha
Helix 11	AB2	B	3	29	Right-handed alpha
Helix 12	AB3	B	33	50	Right-handed alpha
Helix 13	AB4	B	51	57	Right-handed alpha
Helix 14	AB5	B	60	79	Right-handed alpha
Helix 15	AB6	B	84	106	Right-handed alpha
Helix 16	AB7	B	111	131	Right-handed alpha
Helix 17	AB8	C	3	29	Right-handed alpha
Helix 18	AB9	C	33	50	Right-handed alpha
Helix 19	AC1	C	51	57	Right-handed alpha
Helix 20	AC2	C	60	79	Right-handed alpha
Helix 21	AC3	C	84	106	Right-handed alpha
Helix 22	AC4	C	111	131	Right-handed alpha
Helix 23	AC5	D	11	24	Right-handed alpha
Helix 24	AC6	D	73	76	Right-handed 310
Helix 25	AC7	D	88	94	Right-handed alpha
Helix 26	AC8	D	174	177	Right-handed 310
Helix 27	AC9	D	223	230	Right-handed alpha
Helix 28	AD1	D	230	243	Right-handed alpha
Helix 29	AD2	D	244	247	Right-handed 310
Helix 30	AD3	D	251	274	Right-handed alpha
Helix 31	AD4	D	284	310	Right-handed alpha
Helix 32	AD5	D	390	417	Right-handed alpha

There are 6 sheets in PDB entry 9H9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	126	138	anti-parallel
Strand 4	A	59	71	anti-parallel
Strand 5	A	39	54	anti-parallel
Strand 6	A	167	171	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	126	138	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	39	54	anti-parallel
Strand 5	A	179	181	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	A	150	159	anti-parallel
Strand 4	A	208	221	anti-parallel
Strand 5	A	191	205	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	119	122	anti-parallel
Strand 3	D	126	138	anti-parallel
Strand 4	D	59	71	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	167	171	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	126	138	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	39	54	anti-parallel
Strand 5	D	179	181	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	150	159	anti-parallel
Strand 4	D	208	221	anti-parallel
Strand 5	D	191	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H9E