Analysis of interatomic Contacts of Structural Units in PDB entry:
9H9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H9P entry

There are 7 chains in PDB entry 9H9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 58	PHE 92
G	ARG 56	GLN 90
L	GLU 351	TYR 1807
M	PHE 4	GLU 895
l	ARG 3	SER 445
m	ARG 3	SER 445
C	LEU 33	ALA 81

There are 94 helices in PDB entry 9H9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	92	Right-handed alpha
Helix 2	AA2	G	61	90	Right-handed alpha
Helix 3	AA3	L	352	358	Right-handed alpha
Helix 4	AA4	L	392	414	Right-handed alpha
Helix 5	AA5	L	426	447	Right-handed alpha
Helix 6	AA6	L	455	463	Right-handed alpha
Helix 7	AA7	L	463	477	Right-handed alpha
Helix 8	AA8	L	498	512	Right-handed alpha
Helix 9	AA9	L	517	529	Right-handed alpha
Helix 10	AB1	L	529	542	Right-handed alpha
Helix 11	AB2	L	588	607	Right-handed alpha
Helix 12	AB3	L	1477	1482	Right-handed alpha
Helix 13	AB4	L	1484	1503	Right-handed alpha
Helix 14	AB5	L	1504	1516	Right-handed alpha
Helix 15	AB6	L	1523	1535	Right-handed alpha
Helix 16	AB7	L	1546	1562	Right-handed alpha
Helix 17	AB8	L	1601	1606	Right-handed alpha
Helix 18	AB9	L	1609	1642	Right-handed alpha
Helix 19	AC1	L	1652	1682	Right-handed alpha
Helix 20	AC2	L	1682	1687	Right-handed alpha
Helix 21	AC3	L	1699	1716	Right-handed alpha
Helix 22	AC4	L	1719	1721	Right-handed 310
Helix 23	AC5	L	1722	1742	Right-handed alpha
Helix 24	AC6	L	1761	1787	Right-handed alpha
Helix 25	AC7	L	1793	1803	Right-handed alpha
Helix 26	AC8	M	5	17	Right-handed alpha
Helix 27	AC9	M	25	34	Right-handed alpha
Helix 28	AD1	M	46	54	Right-handed alpha
Helix 29	AD2	M	60	73	Right-handed alpha
Helix 30	AD3	M	78	91	Right-handed alpha
Helix 31	AD4	M	91	107	Right-handed alpha
Helix 32	AD5	M	232	236	Right-handed 310
Helix 33	AD6	M	240	253	Right-handed alpha
Helix 34	AD7	M	281	308	Right-handed alpha
Helix 35	AD8	M	314	324	Right-handed alpha
Helix 36	AD9	M	324	343	Right-handed alpha
Helix 37	AE1	M	348	376	Right-handed alpha
Helix 38	AE2	M	380	394	Right-handed alpha
Helix 39	AE3	M	400	412	Right-handed alpha
Helix 40	AE4	M	412	425	Right-handed alpha
Helix 41	AE5	M	445	450	Right-handed alpha
Helix 42	AE6	M	471	473	Right-handed 310
Helix 43	AE7	M	474	490	Right-handed alpha
Helix 44	AE8	M	510	534	Right-handed alpha
Helix 45	AE9	M	536	549	Right-handed alpha
Helix 46	AF1	M	552	568	Right-handed alpha
Helix 47	AF2	M	575	590	Right-handed alpha
Helix 48	AF3	M	591	594	Right-handed 310
Helix 49	AF4	M	597	599	Right-handed 310
Helix 50	AF5	M	609	620	Right-handed alpha
Helix 51	AF6	M	640	642	Right-handed 310
Helix 52	AF7	M	651	656	Right-handed alpha
Helix 53	AF8	M	659	690	Right-handed alpha
Helix 54	AF9	M	706	728	Right-handed alpha
Helix 55	AG1	M	729	741	Right-handed alpha
Helix 56	AG2	M	742	744	Right-handed 310
Helix 57	AG3	M	746	765	Right-handed alpha
Helix 58	AG4	M	769	791	Right-handed alpha
Helix 59	AG5	M	847	875	Right-handed alpha
Helix 60	AG6	M	877	888	Right-handed alpha
Helix 61	AG7	l	10	29	Right-handed alpha
Helix 62	AG8	l	73	80	Right-handed alpha
Helix 63	AG9	l	81	85	Right-handed 310
Helix 64	AH1	l	103	129	Right-handed alpha
Helix 65	AH2	l	144	161	Right-handed alpha
Helix 66	AH3	l	184	199	Right-handed alpha
Helix 67	AH4	l	207	218	Right-handed alpha
Helix 68	AH5	l	225	240	Right-handed alpha
Helix 69	AH6	l	240	245	Right-handed alpha
Helix 70	AH7	l	252	261	Right-handed alpha
Helix 71	AH8	l	289	297	Right-handed alpha
Helix 72	AH9	l	329	331	Right-handed 310
Helix 73	AI1	l	332	344	Right-handed alpha
Helix 74	AI2	l	384	400	Right-handed alpha
Helix 75	AI3	l	419	438	Right-handed alpha
Helix 76	AI4	m	10	29	Right-handed alpha
Helix 77	AI5	m	73	80	Right-handed alpha
Helix 78	AI6	m	81	86	Right-handed 310
Helix 79	AI7	m	103	114	Right-handed alpha
Helix 80	AI8	m	114	127	Right-handed alpha
Helix 81	AI9	m	145	161	Right-handed alpha
Helix 82	AJ1	m	184	199	Right-handed alpha
Helix 83	AJ2	m	206	217	Right-handed alpha
Helix 84	AJ3	m	225	240	Right-handed alpha
Helix 85	AJ4	m	240	245	Right-handed alpha
Helix 86	AJ5	m	254	259	Right-handed alpha
Helix 87	AJ6	m	289	298	Right-handed alpha
Helix 88	AJ7	m	331	344	Right-handed alpha
Helix 89	AJ8	m	381	383	Right-handed 310
Helix 90	AJ9	m	384	402	Right-handed alpha
Helix 91	AK1	m	419	438	Right-handed alpha
Helix 92	AK2	C	34	48	Right-handed alpha
Helix 93	AK3	C	52	65	Right-handed alpha
Helix 94	AK4	C	68	80	Right-handed alpha

There are 9 sheets in PDB entry 9H9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	262	264	first strand
Strand 2	M	273	275	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	437	439	first strand
Strand 2	M	460	462	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	601	605	first strand
Strand 2	M	644	648	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	64	66	first strand
Strand 2	l	4	9	parallel
Strand 3	l	132	138	parallel
Strand 4	l	167	168	parallel
Strand 5	l	201	202	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	52	53	first strand
Strand 2	l	61	62	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	171	172	first strand
Strand 2	l	205	206	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	270	272	first strand
Strand 2	l	376	381	anti-parallel
Strand 3	l	317	324	anti-parallel
Strand 4	l	356	360	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	64	65	first strand
Strand 2	m	4	9	parallel
Strand 3	m	132	140	parallel
Strand 4	m	165	171	parallel
Strand 5	m	201	203	parallel
Strand 6	m	268	269	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	356	360	first strand
Strand 2	m	320	324	parallel
Strand 3	m	376	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H9P