Analysis of interatomic Contacts of Structural Units in PDB entry:
9H9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9H9Q entry

There are 12 chains in PDB entry 9H9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 473
B	GLY 3	ILE 467
C	SER 37	PHE 869
D	LEU 132	LEU 785
E	ASN 231	ARG 267
F	ARG 239	ASN 269
G	GLY 3	ILE 467
H	LEU 132	LEU 785
I	GLY 3	ASP 473
J	SER 37	PHE 869
K	ASN 231	ARG 267
L	ARG 239	ASN 269

There are210 helices in PDB entry 9H9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	30	Right-handed alpha
Helix 2	AA2	A	76	79	Right-handed 310
Helix 3	AA3	A	99	110	Right-handed alpha
Helix 4	AA4	A	114	116	Right-handed 310
Helix 5	AA5	A	132	141	Right-handed alpha
Helix 6	AA6	A	141	156	Right-handed alpha
Helix 7	AA7	A	171	189	Right-handed alpha
Helix 8	AA8	A	212	227	Right-handed alpha
Helix 9	AA9	A	235	243	Right-handed alpha
Helix 10	AB1	A	263	275	Right-handed alpha
Helix 11	AB2	A	275	280	Right-handed alpha
Helix 12	AB3	A	287	294	Right-handed alpha
Helix 13	AB4	A	320	328	Right-handed alpha
Helix 14	AB5	A	329	334	Right-handed 310
Helix 15	AB6	A	357	372	Right-handed alpha
Helix 16	AB7	A	408	426	Right-handed alpha
Helix 17	AB8	A	429	433	Right-handed 310
Helix 18	AB9	A	436	466	Right-handed alpha
Helix 19	AC1	B	11	29	Right-handed alpha
Helix 20	AC2	B	76	79	Right-handed 310
Helix 21	AC3	B	99	110	Right-handed alpha
Helix 22	AC4	B	114	116	Right-handed 310
Helix 23	AC5	B	130	141	Right-handed alpha
Helix 24	AC6	B	141	155	Right-handed alpha
Helix 25	AC7	B	171	188	Right-handed alpha
Helix 26	AC8	B	211	226	Right-handed alpha
Helix 27	AC9	B	235	243	Right-handed alpha
Helix 28	AD1	B	263	275	Right-handed alpha
Helix 29	AD2	B	275	280	Right-handed alpha
Helix 30	AD3	B	287	294	Right-handed alpha
Helix 31	AD4	B	320	329	Right-handed alpha
Helix 32	AD5	B	357	372	Right-handed alpha
Helix 33	AD6	B	408	425	Right-handed alpha
Helix 34	AD7	B	441	464	Right-handed alpha
Helix 35	AD8	C	83	99	Right-handed alpha
Helix 36	AD9	C	117	124	Right-handed alpha
Helix 37	AE1	C	134	162	Right-handed alpha
Helix 38	AE2	C	163	165	Right-handed 310
Helix 39	AE3	C	166	198	Right-handed alpha
Helix 40	AE4	C	202	214	Right-handed alpha
Helix 41	AE5	C	214	236	Right-handed alpha
Helix 42	AE6	C	278	288	Right-handed alpha
Helix 43	AE7	C	293	322	Right-handed alpha
Helix 44	AE8	C	339	341	Right-handed 310
Helix 45	AE9	C	342	349	Right-handed alpha
Helix 46	AF1	C	349	357	Right-handed alpha
Helix 47	AF2	C	362	365	Right-handed 310
Helix 48	AF3	C	371	393	Right-handed alpha
Helix 49	AF4	C	414	437	Right-handed alpha
Helix 50	AF5	C	439	453	Right-handed alpha
Helix 51	AF6	C	456	466	Right-handed alpha
Helix 52	AF7	C	466	471	Right-handed alpha
Helix 53	AF8	C	473	477	Right-handed 310
Helix 54	AF9	C	478	488	Right-handed alpha
Helix 55	AG1	C	503	510	Right-handed alpha
Helix 56	AG2	C	520	528	Right-handed alpha
Helix 57	AG3	C	575	578	Right-handed 310
Helix 58	AG4	C	589	594	Right-handed alpha
Helix 59	AG5	C	595	629	Right-handed alpha
Helix 60	AG6	C	629	634	Right-handed alpha
Helix 61	AG7	C	638	669	Right-handed alpha
Helix 62	AG8	C	670	691	Right-handed alpha
Helix 63	AG9	C	706	711	Right-handed alpha
Helix 64	AH1	C	718	725	Right-handed alpha
Helix 65	AH2	C	739	758	Right-handed alpha
Helix 66	AH3	C	762	794	Right-handed alpha
Helix 67	AH4	C	794	803	Right-handed alpha
Helix 68	AH5	C	815	854	Right-handed alpha
Helix 69	AH6	C	855	869	Right-handed alpha
Helix 70	AH7	D	133	138	Right-handed alpha
Helix 71	AH8	D	139	142	Right-handed 310
Helix 72	AH9	D	149	159	Right-handed alpha
Helix 73	AI1	D	182	209	Right-handed alpha
Helix 74	AI2	D	215	242	Right-handed alpha
Helix 75	AI3	D	246	255	Right-handed alpha
Helix 76	AI4	D	257	270	Right-handed alpha
Helix 77	AI5	D	275	285	Right-handed alpha
Helix 78	AI6	D	286	289	Right-handed 310
Helix 79	AI7	D	291	319	Right-handed alpha
Helix 80	AI8	D	339	343	Right-handed alpha
Helix 81	AI9	D	348	351	Right-handed 310
Helix 82	AJ1	D	357	374	Right-handed alpha
Helix 83	AJ2	D	377	393	Right-handed alpha
Helix 84	AJ3	D	403	427	Right-handed alpha
Helix 85	AJ4	D	431	444	Right-handed alpha
Helix 86	AJ5	D	447	458	Right-handed alpha
Helix 87	AJ6	D	470	485	Right-handed alpha
Helix 88	AJ7	D	486	490	Right-handed 310
Helix 89	AJ8	D	492	494	Right-handed 310
Helix 90	AJ9	D	508	511	Right-handed 310
Helix 91	AK1	D	523	528	Right-handed alpha
Helix 92	AK2	D	529	567	Right-handed alpha
Helix 93	AK3	D	568	571	Right-handed 310
Helix 94	AK4	D	572	608	Right-handed alpha
Helix 95	AK5	D	608	617	Right-handed alpha
Helix 96	AK6	D	617	622	Right-handed alpha
Helix 97	AK7	D	627	632	Right-handed alpha
Helix 98	AK8	D	633	637	Right-handed 310
Helix 99	AK9	D	657	674	Right-handed alpha
Helix 100	AL1	D	690	723	Right-handed alpha
Helix 101	AL2	D	737	755	Right-handed alpha
Helix 102	AL3	D	760	774	Right-handed alpha
Helix 103	AL4	D	778	785	Right-handed alpha
Helix 104	AL5	E	238	266	Right-handed alpha
Helix 105	AL6	F	240	269	Right-handed alpha
Helix 106	AL7	G	11	29	Right-handed alpha
Helix 107	AL8	G	76	79	Right-handed 310
Helix 108	AL9	G	99	110	Right-handed alpha
Helix 109	AM1	G	114	116	Right-handed 310
Helix 110	AM2	G	130	141	Right-handed alpha
Helix 111	AM3	G	141	155	Right-handed alpha
Helix 112	AM4	G	171	188	Right-handed alpha
Helix 113	AM5	G	211	226	Right-handed alpha
Helix 114	AM6	G	235	243	Right-handed alpha
Helix 115	AM7	G	263	275	Right-handed alpha
Helix 116	AM8	G	275	280	Right-handed alpha
Helix 117	AM9	G	287	294	Right-handed alpha
Helix 118	AN1	G	320	329	Right-handed alpha
Helix 119	AN2	G	357	372	Right-handed alpha
Helix 120	AN3	G	408	425	Right-handed alpha
Helix 121	AN4	G	441	464	Right-handed alpha
Helix 122	AN5	H	133	138	Right-handed alpha
Helix 123	AN6	H	139	142	Right-handed 310
Helix 124	AN7	H	149	159	Right-handed alpha
Helix 125	AN8	H	182	209	Right-handed alpha
Helix 126	AN9	H	215	242	Right-handed alpha
Helix 127	AO1	H	246	255	Right-handed alpha
Helix 128	AO2	H	257	270	Right-handed alpha
Helix 129	AO3	H	275	285	Right-handed alpha
Helix 130	AO4	H	286	289	Right-handed 310
Helix 131	AO5	H	291	319	Right-handed alpha
Helix 132	AO6	H	339	343	Right-handed alpha
Helix 133	AO7	H	348	351	Right-handed 310
Helix 134	AO8	H	357	374	Right-handed alpha
Helix 135	AO9	H	377	393	Right-handed alpha
Helix 136	AP1	H	403	427	Right-handed alpha
Helix 137	AP2	H	431	444	Right-handed alpha
Helix 138	AP3	H	447	458	Right-handed alpha
Helix 139	AP4	H	470	485	Right-handed alpha
Helix 140	AP5	H	486	490	Right-handed 310
Helix 141	AP6	H	492	494	Right-handed 310
Helix 142	AP7	H	508	511	Right-handed 310
Helix 143	AP8	H	523	528	Right-handed alpha
Helix 144	AP9	H	529	567	Right-handed alpha
Helix 145	AQ1	H	568	571	Right-handed 310
Helix 146	AQ2	H	572	608	Right-handed alpha
Helix 147	AQ3	H	608	617	Right-handed alpha
Helix 148	AQ4	H	617	622	Right-handed alpha
Helix 149	AQ5	H	627	632	Right-handed alpha
Helix 150	AQ6	H	633	637	Right-handed 310
Helix 151	AQ7	H	657	674	Right-handed alpha
Helix 152	AQ8	H	690	723	Right-handed alpha
Helix 153	AQ9	H	737	755	Right-handed alpha
Helix 154	AR1	H	760	774	Right-handed alpha
Helix 155	AR2	H	778	785	Right-handed alpha
Helix 156	AR3	I	11	30	Right-handed alpha
Helix 157	AR4	I	76	79	Right-handed 310
Helix 158	AR5	I	99	110	Right-handed alpha
Helix 159	AR6	I	114	116	Right-handed 310
Helix 160	AR7	I	132	141	Right-handed alpha
Helix 161	AR8	I	141	156	Right-handed alpha
Helix 162	AR9	I	171	189	Right-handed alpha
Helix 163	AS1	I	212	227	Right-handed alpha
Helix 164	AS2	I	235	243	Right-handed alpha
Helix 165	AS3	I	263	275	Right-handed alpha
Helix 166	AS4	I	275	280	Right-handed alpha
Helix 167	AS5	I	287	294	Right-handed alpha
Helix 168	AS6	I	320	328	Right-handed alpha
Helix 169	AS7	I	329	334	Right-handed 310
Helix 170	AS8	I	357	372	Right-handed alpha
Helix 171	AS9	I	408	426	Right-handed alpha
Helix 172	AT1	I	429	433	Right-handed 310
Helix 173	AT2	I	436	466	Right-handed alpha
Helix 174	AT3	J	83	99	Right-handed alpha
Helix 175	AT4	J	117	124	Right-handed alpha
Helix 176	AT5	J	134	162	Right-handed alpha
Helix 177	AT6	J	163	165	Right-handed 310
Helix 178	AT7	J	166	198	Right-handed alpha
Helix 179	AT8	J	202	214	Right-handed alpha
Helix 180	AT9	J	214	236	Right-handed alpha
Helix 181	AU1	J	278	288	Right-handed alpha
Helix 182	AU2	J	293	322	Right-handed alpha
Helix 183	AU3	J	339	341	Right-handed 310
Helix 184	AU4	J	342	349	Right-handed alpha
Helix 185	AU5	J	349	357	Right-handed alpha
Helix 186	AU6	J	362	365	Right-handed 310
Helix 187	AU7	J	371	393	Right-handed alpha
Helix 188	AU8	J	414	437	Right-handed alpha
Helix 189	AU9	J	439	453	Right-handed alpha
Helix 190	AV1	J	456	466	Right-handed alpha
Helix 191	AV2	J	466	471	Right-handed alpha
Helix 192	AV3	J	473	477	Right-handed 310
Helix 193	AV4	J	478	488	Right-handed alpha
Helix 194	AV5	J	503	510	Right-handed alpha
Helix 195	AV6	J	520	528	Right-handed alpha
Helix 196	AV7	J	575	578	Right-handed 310
Helix 197	AV8	J	589	594	Right-handed alpha
Helix 198	AV9	J	595	629	Right-handed alpha
Helix 199	AW1	J	629	634	Right-handed alpha
Helix 200	AW2	J	638	669	Right-handed alpha
Helix 201	AW3	J	670	691	Right-handed alpha
Helix 202	AW4	J	706	711	Right-handed alpha
Helix 203	AW5	J	718	725	Right-handed alpha
Helix 204	AW6	J	739	758	Right-handed alpha
Helix 205	AW7	J	762	794	Right-handed alpha
Helix 206	AW8	J	794	803	Right-handed alpha
Helix 207	AW9	J	815	854	Right-handed alpha
Helix 208	AX1	J	855	869	Right-handed alpha
Helix 209	AX2	K	238	266	Right-handed alpha
Helix 210	AX3	L	240	269	Right-handed alpha

There are 22 sheets in PDB entry 9H9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	94	96	parallel
Strand 3	A	4	10	parallel
Strand 4	A	159	165	parallel
Strand 5	A	193	200	parallel
Strand 6	A	229	234	parallel
Strand 7	A	303	308	parallel
Strand 8	A	399	406	anti-parallel
Strand 9	A	344	352	anti-parallel
Strand 10	A	384	387	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	89	91	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	93	97	parallel
Strand 3	B	4	10	parallel
Strand 4	B	159	165	parallel
Strand 5	B	193	196	parallel
Strand 6	B	229	234	parallel
Strand 7	B	199	200	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	93	97	parallel
Strand 3	B	4	10	parallel
Strand 4	B	159	165	parallel
Strand 5	B	193	196	parallel
Strand 6	B	229	234	parallel
Strand 7	B	303	308	parallel
Strand 8	B	401	406	anti-parallel
Strand 9	B	344	352	anti-parallel
Strand 10	B	384	387	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	89	91	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	D	174	177	anti-parallel
Strand 3	D	167	169	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	127	129	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	358	360	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	516	first strand
Strand 2	C	580	583	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	333	first strand
Strand 2	D	344	346	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	517	first strand
Strand 2	D	496	500	anti-parallel
Strand 3	K	234	235	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	235	first strand
Strand 2	H	496	500	anti-parallel
Strand 3	H	513	517	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	120	first strand
Strand 2	G	93	97	parallel
Strand 3	G	4	10	parallel
Strand 4	G	159	165	parallel
Strand 5	G	193	196	parallel
Strand 6	G	229	234	parallel
Strand 7	G	199	200	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	120	first strand
Strand 2	G	93	97	parallel
Strand 3	G	4	10	parallel
Strand 4	G	159	165	parallel
Strand 5	G	193	196	parallel
Strand 6	G	229	234	parallel
Strand 7	G	303	308	parallel
Strand 8	G	401	406	anti-parallel
Strand 9	G	344	352	anti-parallel
Strand 10	G	384	387	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	83	first strand
Strand 2	G	89	91	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	174	176	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	331	333	first strand
Strand 2	H	344	346	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	119	first strand
Strand 2	I	94	96	parallel
Strand 3	I	4	10	parallel
Strand 4	I	159	165	parallel
Strand 5	I	193	200	parallel
Strand 6	I	229	234	parallel
Strand 7	I	303	308	parallel
Strand 8	I	399	406	anti-parallel
Strand 9	I	344	352	anti-parallel
Strand 10	I	384	387	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	81	83	first strand
Strand 2	I	89	91	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	107	109	first strand
Strand 2	J	127	129	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	335	first strand
Strand 2	J	358	360	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	513	516	first strand
Strand 2	J	580	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9H9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9H9Q