Analysis of interatomic Contacts of Structural Units in PDB entry:
9HAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HAB entry

There is 1 chain in PDB entry 9HAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 35ASN 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9HAB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 48Right-handed 310
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
74 78Right-handed 310
Helix 4
AA4
A
156 176Right-handed alpha
Helix 5
AA5
A
236 260Right-handed alpha
Helix 6
AA6
A
311 322Right-handed alpha
Helix 7
AA7
A
323 326Right-handed 310
Helix 8
AA8
A
340 344Right-handed 310
Helix 9
AA9
A
364 369Right-handed 310
Helix 10
AB1
A
376 380Right-handed 310
Helix 11
AB2
A
406 410Right-handed 310
Helix 12
AB3
A
422 424Right-handed 310
Helix 13
AB4
A
436 441Right-handed alpha
Helix 14
AB5
A
444 454Right-handed alpha
Helix 15
AB6
A
455 459Right-handed 310
Helix 16
AB7
A
465 480Right-handed alpha
Helix 17
AB8
A
508 511Right-handed 310
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There are 7 sheets in PDB entry 9HAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
500 506anti-parallel
Strand 3
A
431 435anti-parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
298 301anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 101first strand
Strand 2
A
144 153anti-parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
392 393anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 101first strand
Strand 2
A
144 153anti-parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
280 286anti-parallel
Strand 5
A
415 420anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
370 371parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
359 362anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
381 382anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
487 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il